Clone BS25480 Report

Search the DGRC for BS25480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:254
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptLsm11-RA
Protein status:BS25480.pep: full length peptide match
Sequenced Size:803

Clone Sequence Records

BS25480.complete Sequence

803 bp assembled on 2011-07-25

GenBank Submission: KX802647

> BS25480.complete
GAAGTTATCAGTCGACATGGAATCGAGGGACCGGAAAACTTCGAATGAGG
ACGACTCGTCGGAAATCTCCGAATTGGATGTGGGCAGTGATAGGTTTAAT
CCTCTGCGAGCGTTATACGAACCCAATTTTAGGGTGACCGATGCTGTTCC
AAAGGTCATCTACCAGAATCTGGCTGCCTTCGAGAGTGCACTTAAAAAAT
TCGGCATCTGGCAGCTGAACAAGCGCCAAAAGCCGGGATCCGCAGAAGGA
GGAGATCAGGGGACATCGAAAAAGGCTTCCACTTCCGAGGCTGTAGATAT
TCTACCTCCTGAGCGACGTTTTGAGCCGCACCAGATGCCTACCACTAGTA
GCAGAAAGAAGCATCATCGAAATATTTTCACCTACATGGAGGCAGCTGTC
GGTCCATTGGAACTCCTAACGAAGTGCATATCCCCTGCTAGCCACAATGA
ATCCAACGAAAGGAGAAGAGTTCGGGTGGTGATTCGCAAACACGGATCGG
TGGGCGGCAGTGTCGAGGGTGAACTGTTGGCCTTTGACAAGCAGTGGAAC
CTCCTACTGAGGAATGTTACCGAAACCTGGAAGCGACGAAAGTACAATTA
CGGAGAGCAAAACATATGCGACACACCTGTTGATTGCACAGGCCGCCTCA
AGGAGTTGGGTATCACTCTTCCCAGGACTGTAGTCAAAAATCTAAACCGA
AAAAACGTGGAGATTCGGCGAGAGCTCCCACAGATTTTAATACGCGGCGA
GAATGTGGTTCTAGTTAGTTTAATACCAACAAAATAGAAGCTTTCTAGAC
CAT

BS25480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lsm11-RA 771 CG12924-PA 1..771 17..787 3840 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Lsm11-RA 1067 CG12924-RA 87..858 16..787 3845 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9838643..9839414 787..16 3845 99.9 Minus
Blast to na_te.dros performed on 2014-11-26 22:18:09 has no hits.

BS25480.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:29 Download gff for BS25480.complete
Subject Subject Range Query Range Percent Splice Strand
Lsm11-RA 88..851 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:34 Download gff for BS25480.complete
Subject Subject Range Query Range Percent Splice Strand
Lsm11-RA 88..851 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:03 Download gff for BS25480.complete
Subject Subject Range Query Range Percent Splice Strand
Lsm11-RA 88..851 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:03 Download gff for BS25480.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9838650..9839413 17..780 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:34 Download gff for BS25480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5726155..5726918 17..780 99   Minus

BS25480.pep Sequence

Translation from 16 to 786

> BS25480.pep
MESRDRKTSNEDDSSEISELDVGSDRFNPLRALYEPNFRVTDAVPKVIYQ
NLAAFESALKKFGIWQLNKRQKPGSAEGGDQGTSKKASTSEAVDILPPER
RFEPHQMPTTSSRKKHHRNIFTYMEAAVGPLELLTKCISPASHNESNERR
RVRVVIRKHGSVGGSVEGELLAFDKQWNLLLRNVTETWKRRKYNYGEQNI
CDTPVDCTGRLKELGITLPRTVVKNLNRKNVEIRRELPQILIRGENVVLV
SLIPTK*

BS25480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Lsm11-PA 256 CG12924-PA 1..256 1..256 1326 100 Plus