BS25506.complete Sequence
1346 bp assembled on 2011-09-01
GenBank Submission: KX805332
> BS25506.complete
GAAGTTATCAGTCGACATGACCAATTCGGGACGCAATCATCATCGATTCG
ATCAAACATTCCTAGGCGCCACCGAACTGGACGATGAGTTAATCAAACAA
CTGCCAAAGGAGGTACTGCTGCGCGTCTTCTCCTACCTGGATGTTGTCTC
ACTATGCCGCTGTGCACAGGTATGCAAATATTGGAACGTGCTGGCCCTCG
ACGGTTCCAGCTGGCAGAAAATCAATCTATTCGACTTTCAACGTGATATC
GAGGGTCCAGTGATTGAGAATATATCGCAGCGATGTCGCGGTTTTCTCAA
GTCACTGTCGCTGCGTGGCTGCCAATCGGTGGGAGATCAGTCCGTGAGAA
CTCTAGCGAACCACTGCCACAATATCGAGCACTTAGATCTGTCGGATTGC
AAGAAGATAACCGATATATCCACACAGTCCATCAGCAGGTATTGCTCCAA
GCTAACGGCCATTAATTTGCACTCGTGCTCCAACATAACAGACAACAGCT
TGAAGTACTTATCCGATGGCTGTCCAAATCTCATGGAGATCAACGTGTCC
TGGTGCCACCTGATCTCCGAGAATGGTGTGGAGGCGCTGGCTCGTGGCTG
CGTCAAGCTGCGCAAATTCAGCAGTAAAGGTTGTAAACAAATAAACGACA
ATGCCATAATGTGCCTGGCCAAATACTGTCCCGATTTAATGGTGCTAAAT
CTACACAGCTGCGAGACCATAACCGATTCATCGATTCGCCAACTGGCCGC
CAATTGCCACAAGCTGCAGAAGTTGTGCGTGTCCAAGTGCGCGGACCTCA
CCGATCTCACTCTGTTGTCCCTCTCGCAGCACAATCATCTACTGAACACC
CTGGAGGTATCCGGGTGTCGCAACTTCACGGACATTGGCTTCCAGGCGCT
GGGGCGAAACTGCAAGTATCTGGAGCGAATGGACCTGGAGGAGTGCAGCC
AGATTACAGACCTAACGTTGGCTCATCTTGCCACTGGCTGTCCCAGCTTA
GAGAAATTGACCCTATCGCACTGTGAGCTGATTACGGACGATGGTATTCG
ACACCTCACCACTGGCAGCTGTGCTGCCGAAATTCTGTCCGTGCTGGAGC
TAGACAACTGCCCCCTGATAACCGACCGAACGCTAGAGCATTTGGTGTCC
TGCCACAATCTGCAGCGCATCGAGTTATTCGACTGTCAGCTTATCACCCG
CACCGCCATACGCAAGCTGAAGAACCATCTACCAAATATCAAGGTGCACG
CCTACTTCGCCCCCGGAACGCCGCCGGCTGTGACCAGCGGACACCGACCA
CGCTATTGCCGCTGCTGTGAGATTCTCTGAAAGCTTTCTAGACCAT
BS25506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9003-RG | 1314 | CG9003-PG | 1..1314 | 17..1330 | 6570 | 100 | Plus |
| CG9003-RF | 1368 | CG9003-PF | 1..1314 | 17..1330 | 6570 | 100 | Plus |
| CG9003-RE | 1368 | CG9003-PE | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9003-RG | 3693 | CG9003-RG | 668..1981 | 17..1330 | 6570 | 100 | Plus |
| CG9003-RF | 2885 | CG9003-RF | 651..1964 | 17..1330 | 6570 | 100 | Plus |
| CG9003-RE | 2885 | CG9003-RE | 651..1964 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11643633..11643928 | 1009..714 | 1480 | 100 | Minus |
| 2R | 25286936 | 2R | 11643360..11643577 | 1222..1005 | 1075 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11643991..11644179 | 715..527 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 11644239..11644418 | 526..347 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11644845..11644964 | 172..53 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 11643189..11643298 | 1330..1221 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 11644485..11644581 | 348..252 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 11644680..11644769 | 254..165 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:39:33 has no hits.
BS25506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-01 13:47:32 Download gff for
BS25506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RD | 674..1986 | 17..1329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:07 Download gff for
BS25506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RE | 651..1963 | 17..1329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:40 Download gff for
BS25506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RE | 651..1963 | 17..1329 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:40 Download gff for
BS25506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11643991..11644179 | 527..715 | 100 | <- | Minus |
| 2R | 11644239..11644416 | 349..526 | 100 | <- | Minus |
| 2R | 11644485..11644579 | 254..348 | 100 | <- | Minus |
| 2R | 11644681..11644764 | 170..253 | 100 | <- | Minus |
| 2R | 11644848..11644964 | 53..169 | 100 | <- | Minus |
| 2R | 11650815..11650850 | 17..52 | 100 | | Minus |
| 2R | 11643190..11643296 | 1223..1329 | 100 | <- | Minus |
| 2R | 11643360..11643572 | 1010..1222 | 100 | <- | Minus |
| 2R | 11643633..11643926 | 716..1009 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:07 Download gff for
BS25506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7530695..7530801 | 1223..1329 | 100 | <- | Minus |
| arm_2R | 7530865..7531077 | 1010..1222 | 100 | <- | Minus |
| arm_2R | 7531138..7531431 | 716..1009 | 100 | <- | Minus |
| arm_2R | 7531496..7531684 | 527..715 | 100 | <- | Minus |
| arm_2R | 7531744..7531921 | 349..526 | 100 | <- | Minus |
| arm_2R | 7531990..7532084 | 254..348 | 100 | <- | Minus |
| arm_2R | 7532186..7532269 | 170..253 | 100 | <- | Minus |
| arm_2R | 7532353..7532469 | 53..169 | 100 | <- | Minus |
| arm_2R | 7538320..7538355 | 17..52 | 100 | | Minus |
BS25506.pep Sequence
Translation from 16 to 1329
> BS25506.pep
MTNSGRNHHRFDQTFLGATELDDELIKQLPKEVLLRVFSYLDVVSLCRCA
QVCKYWNVLALDGSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSLR
GCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAIN
LHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRK
FSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKL
QKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCK
YLERMDLEECSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTG
SCAAEILSVLELDNCPLITDRTLEHLVSCHNLQRIELFDCQLITRTAIRK
LKNHLPNIKVHAYFAPGTPPAVTSGHRPRYCRCCEIL*
BS25506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9003-PG | 437 | CG9003-PG | 1..437 | 1..437 | 2335 | 100 | Plus |
| CG9003-PF | 497 | CG9003-PF | 1..437 | 1..437 | 2335 | 100 | Plus |
| CG9003-PE | 455 | CG9003-PE | 1..437 | 1..437 | 2335 | 100 | Plus |
| CG9003-PD | 437 | CG9003-PD | 1..437 | 1..437 | 2335 | 100 | Plus |
| CG9003-PC | 426 | CG9003-PC | 2..426 | 13..437 | 2265 | 100 | Plus |
