BS25509.complete Sequence
1550 bp assembled on 2011-09-01
GenBank Submission: KX802151
> BS25509.complete
GAAGTTATCAGTCGACATGGCTTTGGTTTGCGCACTGACAAACGAAGTCC
CCGAGACGCCCGTGGTTTCCCCGCACTCGGGAGCCGTTTTCGAAAAGCGG
GTGATTGAGAAGTATCTGTTAGAGAATGGCTGCGATCCCATTAGCGGCAA
GGAGCTGAAGCCGGAGGAGCTGATCGAGATCAAGACGCCGGCTGTGGTGA
AACCGAAACCGCCAAGTGCCACCAGCATTCCGGCCACTTTGAAAACGATG
CAGGACGAGTGGGACGCCCTCATGATTCACTCGTTCACACAACGCCAGCA
GCTGCAAACGACGCGCCAGGAGTTGTCCCATGCGCTGTATCAGCACGATG
CCGCCTGTCGTGTGATTGCCCGCCTCAATAAGGAGGTGGCCGCCGCTCGC
GAAGCTCTGGCCACGTTGAAACCGCAGGCGGGCATTGCCAACGCACCCAC
GGCAATACCACAACCGGCCCTGGCCTCTGAGGCTGGCGGAGCTGCTGCCC
ATCCCATGGAGCAGGCGGGCATGAGCGCCGAGGTCATACAGAAACTGCAG
GACAAGGCCACGGTGCTGACGCAGGAGCGTAAGAAGCGCGGACGCACTGT
GCCCGAGGATCTGGTTACAACGGATCAGGTTAAGAACTTCCTTACTGTGG
CATCCCATCCCGGCCTACACTCGGCCTCCGTTCCCGGCATTCTGGCCTTG
GACATCAACAGTGCTGATCACAGTAAGATTCTGACCGGAGGCAACGATAA
AAACGCCACCGTGTTCAACAAGGACACAGAGCAGATGGTGGCCATCCTGA
AGGGACACACCAAGAAGATCACCAAAGTCATATATCATCCTAACGAGGAT
ACAGTCATAACCGGCTCGCCCGACATGAACATACGCATCTGGCACGTGCC
CACTTCGCAGACGCAGCTTCTCCTGCGCTGCCACGAAGGACCTGTTACTG
GCCTTTCGCTGCACCCCACTGGCGACTACTTGCTGTCCACATCATCCGAC
AAACACTGGGCATTCTCCGATATCCGCACAGGACGCCTGCTCACCAAGGT
AATCGATACCGCCGAAGTCGGGCTGACGACAGCGCAATTCCATCCTGATG
GTCTGATCTTCGGTACGGGCACCGTGGACTCGCAGGTTAAGATCTGGGAT
TTGAAGGAGCAGAGCAATGTGGCCAACTTCCCTGGTCATACCGGTCCCAT
TTCGGCCATCTCCTTCTCGGAGAACGGTTACTACCTGGCCACCGCTGCAG
ATGATGCCTGCGTTAAGCTGTGGGATCTGCGAAAGCTGAAGAACTTTAAG
ACAATCCAGCTTGATGACGGCTACGAGGTCAAGGATCTGTGCTTCGACCA
AAGCGGAACCTATCTGGCTATCGCCGGCAGCGATGTCAGGGTTTACCTGT
GCAAGCAGTGGCAGGAACTGAAGGTATTCAACGACCACACGGCCCTGGCA
ACGGGCGTGAGATTCGGCAAGCACGCCCAGTATCTGGCATCCACCAGCAT
GGACCGCACCCTGAAGCTCTACGCCATCGAATAAAAGCTTTCTAGACCAT
BS25509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp19-RA | 1518 | CG5519-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp19-RA | 1757 | CG5519-RA | 134..1651 | 17..1534 | 7590 | 100 | Plus |
| CG30120-RB | 2533 | CG30120-RB | 795..942 | 1534..1387 | 740 | 100 | Minus |
| CG5189-RB | 2533 | CG5189-RB | 795..942 | 1534..1387 | 740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18449471..18450825 | 1390..36 | 6775 | 100 | Minus |
| 2R | 25286936 | 2R | 18447467..18447614 | 1534..1387 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:40:03 has no hits.
BS25509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-01 13:47:33 Download gff for
BS25509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp19-RA | 133..1648 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:19 Download gff for
BS25509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp19-RA | 134..1649 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:48 Download gff for
BS25509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp19-RA | 134..1649 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:48 Download gff for
BS25509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18447469..18447611 | 1390..1532 | 100 | <- | Minus |
| 2R | 18449472..18450825 | 36..1389 | 100 | <- | Minus |
| 2R | 18450890..18450908 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:19 Download gff for
BS25509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14334974..14335116 | 1390..1532 | 100 | <- | Minus |
| arm_2R | 14336977..14338330 | 36..1389 | 100 | <- | Minus |
| arm_2R | 14338395..14338413 | 17..35 | 100 | | Minus |
BS25509.pep Sequence
Translation from 16 to 1533
> BS25509.pep
MALVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPE
ELIEIKTPAVVKPKPPSATSIPATLKTMQDEWDALMIHSFTQRQQLQTTR
QELSHALYQHDAACRVIARLNKEVAAAREALATLKPQAGIANAPTAIPQP
ALASEAGGAAAHPMEQAGMSAEVIQKLQDKATVLTQERKKRGRTVPEDLV
TTDQVKNFLTVASHPGLHSASVPGILALDINSADHSKILTGGNDKNATVF
NKDTEQMVAILKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQ
LLLRCHEGPVTGLSLHPTGDYLLSTSSDKHWAFSDIRTGRLLTKVIDTAE
VGLTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISF
SENGYYLATAADDACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYL
AIAGSDVRVYLCKQWQELKVFNDHTALATGVRFGKHAQYLASTSMDRTLK
LYAIE*
BS25509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp19-PA | 505 | CG5519-PA | 1..505 | 1..505 | 2614 | 100 | Plus |
| U4-U6-60K-PA | 553 | CG6322-PA | 270..550 | 232..503 | 272 | 25.8 | Plus |
| CG7568-PD | 467 | CG7568-PD | 110..427 | 217..505 | 245 | 27.2 | Plus |
| CG7568-PE | 482 | CG7568-PE | 110..427 | 217..505 | 245 | 27.2 | Plus |
| Taf5-PA | 704 | CG7704-PA | 429..654 | 244..474 | 240 | 29.1 | Plus |
| CG7568-PE | 482 | CG7568-PE | 278..479 | 234..435 | 170 | 23.3 | Plus |
