BS25511.complete Sequence
1745 bp assembled on 2011-08-30
GenBank Submission: KX806369
> BS25511.complete
GAAGTTATCAGTCGACATGTCTTCGAATAACCAGAGCAGCAGCGTTGCCC
AGGCGGCAACAAGTGCCCGCACCGTCAGTGCCGGATCGGCGGAAGCCACA
GATGCCAATAGTACCGCCTCGAACAACAACAATAATAGCAGCAGTACCGC
TGCAGCGGGCAACAACAGCGACAACAGCAGTCCCACCACTGGAACGGGCA
CAGGAGCGAGCACTGGAAAGCTGCACGGCGGCCACACGGCAGTAAACACC
AAGGAACGGGTGGTGGACAGCGTTCCCTTCCCGCCCAGCCACAAGCTGAC
CTTGGCGGAGGTGTTCGACCAACGCACCGGCAAGCCCAACCATGAGCTGC
TCAAGCAGCACTTCATTCTTGAGGGCAGAATCGAGGAGGCGCCCGCCCTG
AAAATCATCCAGGACGGAGCCGCCCTGCTGCGTCAGGAGAAGACGATGAT
CGATATTGAGGCGCCGGTGACGGTGTGCGGTGATATCCACGGCCAGTTCT
ACGACCTGATGAAGCTGTTCGAAGTGGGCGGCTCGCCCGCGAGCACCAAG
TATCTGTTCCTGGGCGACTACGTCGATCGGGGCTACTTCAGCATCGAGTG
CGTCCTGTATTTGTGGTCGCTAAAGATCACCTATCCGCAGACGCTGTTCC
TGCTGCGCGGCAACCACGAGTGCCGGCACTTAACCGAGTACTTCACCTTC
AAGCAGGAGTGCAAGATCAAGTACTCGGAGCGCGTGTACGACGCCTGCAT
GGACGCATTCGACTGCCTGCCGCTGGCGGCGCTAATGAACCAGCAGTTCC
TCTGCGTGCACGGCGGTCTGTCGCCGGAGATACACGAGCTGGAGGACATC
CGGCGGCTCGACCGCTTCAAGGAGCCGCCCGCCTTTGGCCCCATGTGCGA
CCTGCTGTGGTCCGATCCCCTGGAGGACTTTGGCAACGAGAAGAACTCGG
ACTTCTACACGCACAACTCCGTGCGCGGATGCTCGTACTTCTACAGCTAC
GCCGCCTGCTGCGACTTCCTGCAGAACAACAACCTGCTGTCGATCATCCG
GGCGCACGAGGCGCAGGACGCCGGCTACCGCATGTACCGCAAAAGCCAGA
CCACCGGCTTCCCCTCGCTGATCACCATCTTCTCGGCGCCCAACTATCTC
GACGTGTACAACAACAAGGCGGCGGTGCTGAAGTACGAGAACAACGTGAT
GAACATCCGGCAATTCAACTGCTCGCCGCACCCGTACTGGCTGCCCAACT
TCATGGACGTGTTCACCTGGTCGCTACCCTTCGTGGGCGAGAAGGTCACC
GAGATGTTGGTGAACGTGCTGAACATCTGCTCCGACGACGAGCTCATGAC
CGAGGAGAGCGAGGAGCCGCTCTCCGACGACGAGGCGGCGCTGCGCAAGG
AGGTGATACGCAACAAGATCCGTGCCATTGGCAAGATGGCGCGCGTCTTC
TCCGTGCTGCGCGAGGAGTCCGAGTCGGTGCTGCAGCTGAAGGGCCTGAC
GCCCACGGGCGCCCTGCCCCTCGGCGCCCTCTCCGGCGGCAAGCAGTCGC
TCAAGAACGCCATGCAGGGCTTCTCGCCCAACCACAAGATTACCTCGTTC
GCGGAGGCCAAGGGCCTGGATGCCGTCAACGAACGGATGCCGCCGCGGCG
GGATCAGCCGCCCACGCCCAGCGAGGATCCGAATCAGCACAGTCAGCAGG
GCGGCAAAAATGGGGCTGGACATGGGTAAAAGCTTTCTAGACCAT
BS25511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp2B-14D-RB | 1713 | CG9842-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| Pp2B-14D-RC | 1713 | CG9842-PC | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| Pp2B-14D-RA | 1713 | CG9842-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp2B-14D-RB | 4551 | CG9842-RB | 609..2322 | 16..1729 | 8570 | 100 | Plus |
| Pp2B-14D-RC | 5390 | CG9842-RC | 609..2322 | 16..1729 | 8570 | 100 | Plus |
| Pp2B-14D-RA | 3253 | CG9842-RA | 609..2322 | 16..1729 | 8570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16557695..16559408 | 1729..16 | 8570 | 100 | Minus |
| X | 23542271 | X | 16566369..16567772 | 1654..251 | 5940 | 94.9 | Minus |
| 3R | 32079331 | 3R | 31042487..31042692 | 863..1068 | 595 | 85.9 | Plus |
| 3R | 32079331 | 3R | 31043114..31043244 | 1166..1296 | 445 | 89.3 | Plus |
| 3R | 32079331 | 3R | 31041633..31041875 | 356..598 | 435 | 78.6 | Plus |
| 3R | 32079331 | 3R | 31042283..31042398 | 716..831 | 295 | 83.6 | Plus |
| 3R | 32079331 | 3R | 31042763..31042853 | 1079..1169 | 215 | 82.4 | Plus |
| 3R | 32079331 | 3R | 31044206..31044298 | 1463..1555 | 210 | 81.7 | Plus |
| 3R | 32079331 | 3R | 31046100..31046150 | 1594..1644 | 210 | 94.1 | Plus |
| X | 23542271 | X | 20422643..20422713 | 532..462 | 205 | 85.9 | Minus |
| 3R | 32079331 | 3R | 31041962..31042080 | 597..715 | 205 | 78.2 | Plus |
| 3R | 32079331 | 3R | 31044064..31044131 | 1386..1453 | 205 | 86.8 | Plus |
| 2L | 23513712 | 2L | 7830510..7830633 | 464..587 | 200 | 77.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1499..1588 | 93..182 | 142 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6868 | 20..189 | 141 | 60.7 | Plus |
BS25511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:31 Download gff for
BS25511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 613..2323 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:08 Download gff for
BS25511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 617..2327 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:39 Download gff for
BS25511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp2B-14D-RA | 610..2320 | 17..1727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:39 Download gff for
BS25511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16557697..16559407 | 17..1727 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:08 Download gff for
BS25511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16451730..16453440 | 17..1727 | 100 | | Minus |
BS25511.pep Sequence
Translation from 16 to 1728
> BS25511.pep
MSSNNQSSSVAQAATSARTVSAGSAEATDANSTASNNNNNSSSTAAAGNN
SDNSSPTTGTGTGASTGKLHGGHTAVNTKERVVDSVPFPPSHKLTLAEVF
DQRTGKPNHELLKQHFILEGRIEEAPALKIIQDGAALLRQEKTMIDIEAP
VTVCGDIHGQFYDLMKLFEVGGSPASTKYLFLGDYVDRGYFSIECVLYLW
SLKITYPQTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDC
LPLAALMNQQFLCVHGGLSPEIHELEDIRRLDRFKEPPAFGPMCDLLWSD
PLEDFGNEKNSDFYTHNSVRGCSYFYSYAACCDFLQNNNLLSIIRAHEAQ
DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQF
NCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDELMTEESEE
PLSDDEAALRKEVIRNKIRAIGKMARVFSVLREESESVLQLKGLTPTGAL
PLGALSGGKQSLKNAMQGFSPNHKITSFAEAKGLDAVNERMPPRRDQPPT
PSEDPNQHSQQGGKNGAGHG*
BS25511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp2B-14D-PB | 570 | CG9842-PB | 1..570 | 1..570 | 3012 | 100 | Plus |
| Pp2B-14D-PC | 570 | CG9842-PC | 1..570 | 1..570 | 3012 | 100 | Plus |
| Pp2B-14D-PA | 570 | CG9842-PA | 1..570 | 1..570 | 3012 | 100 | Plus |
| CanA-14F-PD | 584 | CG9819-PD | 7..562 | 6..554 | 2497 | 85.4 | Plus |
| CanA-14F-PC | 584 | CG9819-PC | 7..562 | 6..554 | 2497 | 85.4 | Plus |
