BS25513.complete Sequence
1859 bp assembled on 2011-08-30
GenBank Submission: KX803341
> BS25513.complete
GAAGTTATCAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAA
TTTCTTCATTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAG
CGCGGAAGCGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTC
CGACAATAACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGG
GCACTGTGCTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTG
CGCAACATTCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCAT
TCCGTTTGGACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGG
CTTTCATCGAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGT
TACACAGTAACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTT
TTCTAATCATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCG
CCCATAGCGACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCC
CTTAGCGCCGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGA
CAGCAACAGCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGG
GCGGCAACACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATT
GTCGAGTCCTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTT
CCAGCGCTACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATT
CATTCCAGGCCCTCATCCAATATCCGGACGCCAATTCCGCCCAGCACGCC
AAGTCGCTCCTGGACGGGCAGAATATATACAACGGTTGCTGCACGTTGCG
TATTGATAACAGCAAGCTGACGGCTCTGAATGTTAAGTACAACAACGACA
AATCGCGCGACTTCACTAACCCCGCTCTGCCACCTGGTGAACCGGGAGTG
GATATCATGCCCACCGCCGGCGGACTGATGAACACCAATGATTTGCTTTT
GATCGCCGCCCGTCAGCGACCTTCTCTCTCAGGTGATAAAATAGTCAACG
GCCTGGGCGCCCCCGGAGTCCTGCCGCCCTTTGCCTTGGGCCTGGGCACT
CCACTGACCGGTGGATACAACAACGCACTGCCCAACTTAGCAGCTTTCTC
GCTGGCCAACAGTGGCGCCCTGCAGACGACCGCTCCTGCAATGCGAGGTT
ACTCGAATGTCTTGCTTGTCTCGAATTTAAATGAGGAGATGGTCACGCCT
GATGCTCTCTTTACCCTTTTTGGTGTATACGGCGATGTGCAACGTGTAAA
GATTCTGTACAACAAGAAGGACTCGGCACTCATACAAATGGCGGAGCCCC
AGCAAGCTTATTTGGCCATGTCTCACCTTGATAAATTACGTTTATGGGGA
AAGCCGATACGTGTGATGGCAAGCAAACACCAGGCCGTCCAGCTGCCCAA
GGAGGGACAGCCGGACGCAGGACTCACACGTGACTACTCGCAAAATCCGT
TGCACCGCTTCAAGAAACCGGGAAGCAAGAACTACCAGAACATCTATCCG
CCGTCGGCGACACTACATTTAAGCAACATTCCCTCATCCTGCTCTGAGGA
TGACATCAAAGAAGCTTTCACCTCAAACAGCTTTGAAGTTAAGGCATTCA
AATTTTTCCCGAAGGACCGTAAAATGGCACTGCTTCAACTGTTGTCCGTG
GAGGAGGCTGTCCTAGCACTGATTAAGATGCACAACCACCAGCTGTCCGA
GTCGAATCACCTGCGTGTAAGCTTCTCGAAGTCGAACATCTAGAAGCTTT
CTAGACCAT
BS25513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RG | 1848 | CG31000-PG | 21..1848 | 16..1843 | 9140 | 100 | Plus |
| heph-RV | 1827 | CG31000-PV | 1..1827 | 17..1843 | 9135 | 100 | Plus |
| heph-RP | 1827 | CG31000-PP | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RV | 3128 | CG31000-RV | 930..2759 | 16..1845 | 9150 | 100 | Plus |
| heph-RP | 2592 | CG31000-RP | 394..2223 | 16..1845 | 9150 | 100 | Plus |
| heph-RN | 7366 | CG31000-RN | 671..2500 | 16..1845 | 9150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31866118..31866436 | 809..491 | 1595 | 100 | Minus |
| 3R | 32079331 | 3R | 31865751..31866038 | 1094..807 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 31873834..31874100 | 490..224 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 31852592..31852809 | 1632..1415 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 31865132..31865327 | 1288..1093 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 31851853..31851987 | 1845..1711 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31881748..31881873 | 224..99 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 31857879..31857972 | 1415..1322 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 31959035..31959119 | 100..16 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 31852097..31852175 | 1711..1633 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 31864595..31864632 | 1324..1287 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:44 has no hits.
BS25513.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:33 Download gff for
BS25513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RM | 1187..1269 | 17..99 | 100 | -> | Plus |
| heph-RM | 1308..3050 | 100..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:19 Download gff for
BS25513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RN | 672..2498 | 17..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:58 Download gff for
BS25513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RN | 672..2498 | 17..1843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:58 Download gff for
BS25513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31873834..31874099 | 225..490 | 100 | <- | Minus |
| 3R | 31881748..31881871 | 101..224 | 100 | <- | Minus |
| 3R | 31959035..31959118 | 17..100 | 100 | | Minus |
| 3R | 31866119..31866436 | 491..808 | 100 | <- | Minus |
| 3R | 31865751..31866036 | 809..1094 | 100 | <- | Minus |
| 3R | 31851855..31851987 | 1711..1843 | 100 | <- | Minus |
| 3R | 31852098..31852175 | 1633..1710 | 100 | <- | Minus |
| 3R | 31852592..31852808 | 1416..1632 | 100 | <- | Minus |
| 3R | 31857879..31857971 | 1323..1415 | 100 | <- | Minus |
| 3R | 31864597..31864630 | 1289..1322 | 100 | <- | Minus |
| 3R | 31865132..31865325 | 1095..1288 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:19 Download gff for
BS25513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27784757..27784840 | 17..100 | 100 | | Minus |
| arm_3R | 27677577..27677709 | 1711..1843 | 100 | <- | Minus |
| arm_3R | 27677820..27677897 | 1633..1710 | 100 | <- | Minus |
| arm_3R | 27678314..27678530 | 1416..1632 | 100 | <- | Minus |
| arm_3R | 27683601..27683693 | 1323..1415 | 100 | <- | Minus |
| arm_3R | 27690319..27690352 | 1289..1322 | 100 | <- | Minus |
| arm_3R | 27690854..27691047 | 1095..1288 | 100 | <- | Minus |
| arm_3R | 27691473..27691758 | 809..1094 | 100 | <- | Minus |
| arm_3R | 27691841..27692158 | 491..808 | 100 | <- | Minus |
| arm_3R | 27699556..27699821 | 225..490 | 100 | <- | Minus |
| arm_3R | 27707470..27707593 | 101..224 | 100 | <- | Minus |
BS25513.pep Sequence
Translation from 16 to 1842
> BS25513.pep
MMSCPIPMPMPISSLHKSEFEPVNIGVKRGSDELLSQAAVMAPASDNNNQ
DLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRV
TNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRE
LKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAM
GILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGK
VLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSK
LTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQ
RPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSG
ALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNK
KDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPD
AGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEA
FTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLR
VSFSKSNI*
BS25513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-PV | 608 | CG31000-PV | 1..608 | 1..608 | 3109 | 100 | Plus |
| heph-PP | 608 | CG31000-PP | 1..608 | 1..608 | 3109 | 100 | Plus |
| heph-PN | 608 | CG31000-PN | 1..608 | 1..608 | 3109 | 100 | Plus |
| heph-PB | 608 | CG31000-PB | 1..608 | 1..608 | 3109 | 100 | Plus |
| heph-PK | 608 | CG31000-PK | 1..608 | 1..608 | 3109 | 100 | Plus |
