BS25514.complete Sequence
1874 bp assembled on 2011-08-30
GenBank Submission: KX805070
> BS25514.complete
GAAGTTATCAGTCGACATGATGGACGGCTACGCGCAGGAATGGCCCAGGC
TGACCCACACAGATAACGGCCTGGCCATGGACCAGCTGGGCGGGGATCTG
CCCCTGGACGTGGGCTTCGAGCCACAGACCCGGGCCAGATCCAACACATG
GCCATGTCCGCGTCCCGAAAACTTTGTGGAGCCCACCGACGAGTTGGACA
GTACAAAGGCCAGCAATCAGCAGTTGGCCCCAGGAGACTCACAGCAGGCT
ATACAGAATGCGAATGCAGCCAAGAAGAACTCATCGCGTCGCAATGCATG
GGGAAATCTATCCTATGCGGATCTCATCACGCATGCCATTGGATCGGCCA
CCGACAAACGATTGACACTGAGTCAGATTTACGAGTGGATGGTCCAGAAT
GTGCCATATTTCAAGGACAAGGGCGATTCGAATAGCAGTGCCGGATGGAA
GAACTCCATACGTCACAATCTGTCGCTGCACAACCGCTTTATGAGGGTCC
AAAACGAGGGCACCGGCAAGTCATCCTGGTGGATGCTCAACCCGGAGGCC
AAGCCCGGCAAGTCTGTGCGCCGCCGTGCCGCTTCCATGGAGACGTCCCG
GTACGAGAAGCGGCGCGGCAGGGCCAAGAAGCGGGTGGAGGCACTGCGTC
AGGCGGGCGTGGTGGGCCTCAACGATGCCACGCCCTCGCCCAGCAGCAGC
GTCAGCGAGGGGCTGGATCACTTTCCCGAGAGTCCGCTCCACAGTGGCGG
TGGCTTCCAATTATCGCCCGATTTCCGGCAACGCGCCTCATCCAATGCCA
GTTCCTGCGGACGCCTGAGCCCCATTAGGGCGCAGGATCTTGAGCCCGAC
TGGGGATTCCCCGTTGACTACCAGAACACAACGATGACGCAGGCCCACGC
CCAGGCGCTCGAGGAGCTGACGGGCACAATGGCGGATGAGCTGACGCTGT
GCAACCAGCAGCAGCAAGGGTTCAGTGCCGCCTCGGGACTTCCCTCTCAG
CCCCCGCCCCCGCCCTATCAGCCGCCGCAGCATCAACAGGCGCAGCAGCA
GCAACAGCAGCAGTCGCCCTACGCCCTCAACGGCCCCGCCTCCGGCTACA
ACACGCTGCAGCCGCAGTCGCAGTGCCTGCTGCACCGGTCCCTCAATTGC
AGTTGCATGCACAATGCAAGAGATGGTCTCTCGCCGAACTCAGTAACCAC
AACAATGTCGCCCGCCTATCCAAACAGCGAGCCCTCATCGGACTCCCTGA
ACACGTACAGCAACGTGGTGCTCGATGGTCCGGCGGACACTGCGGCACTG
ATGGTGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCTGTCCGCCAG
CTTGGAAGGACAATGCCTGGAGGTGCTCAATAACGAGGCGCAGCCGATAG
ACGAATTTAATCTGGAGAACTTTCCCGTGGGCAATCTCGAGTGCAATGTC
GAGGAGCTGCTGCAGCAGGAGATGAGCTACGGCGGCCTGCTGGACATCAA
TATACCGCTGGCCACGGTCAACACGAACCTGGTCAACAGCAGCAGTGGGC
CCCTGAGCATCAGCAACATTAGCAACCTCAGCAACATAAGCAGCAATTCC
GGCAGCAGTCTCAGTCTGAATCAGTTGCAGGCTCAGCTGCAACAGCAGCA
GCAGCAGCAGCAGGCGCAGCAACAGCAGCAGGCGCAGCAGCAACAACAGC
AGCATCAGCAGCACCAGCAACAGTTGCTGCTAAATAATAACAACAACAGC
AGCAGCAGCCTGGAATTGGCAACACAAACGGCTACCACAAATCTGAATGC
TCGGGTTCAGTACTCACAGCCCAGCGTGGTGACCTCGCCACCATCCTGGG
TGCACTAGAAGCTTTCTAGACCAT
BS25514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| foxo-RC | 1842 | CG3143-PC | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| foxo-RB | 1842 | CG3143-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| foxo-RH | 1860 | CG3143-PH | 1..1860 | 17..1858 | 8995 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| foxo-RC | 3548 | CG3143-RC | 416..2259 | 16..1859 | 9220 | 100 | Plus |
| foxo-RB | 3939 | CG3143-RB | 807..2650 | 16..1859 | 9220 | 100 | Plus |
| foxo-RH | 3566 | CG3143-RH | 416..2277 | 16..1859 | 9005 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14081495..14081899 | 1455..1859 | 2025 | 100 | Plus |
| 3R | 32079331 | 3R | 14079344..14079638 | 450..744 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 14080237..14080465 | 743..971 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 14066642..14066862 | 16..236 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 14066936..14067152 | 235..451 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 14080710..14080916 | 969..1175 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 14081004..14081188 | 1175..1359 | 925 | 100 | Plus |
| 3R | 32079331 | 3R | 14081332..14081431 | 1357..1456 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6924 | 1305..1725 | 439 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2536 | 1530..1760 | 362 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2556 | 1519..1739 | 344 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2986 | 1019..1722 | 309 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..7062 | 1416..1786 | 288 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..7058 | 1534..1750 | 192 | 58.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1146 | 1534..1607 | 159 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6891 | 1017..1122 | 133 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6913 | 951..1063 | 123 | 61.7 | Plus |
BS25514.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:33 Download gff for
BS25514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| foxo-RC | 394..2235 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:46 Download gff for
BS25514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| foxo-RB | 808..2649 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:20 Download gff for
BS25514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| foxo-RB | 808..2649 | 17..1858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:20 Download gff for
BS25514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14080239..14080463 | 745..969 | 100 | -> | Plus |
| 3R | 14080711..14080915 | 970..1174 | 100 | -> | Plus |
| 3R | 14066643..14066862 | 17..236 | 100 | -> | Plus |
| 3R | 14066938..14067152 | 237..451 | 100 | -> | Plus |
| 3R | 14081004..14081187 | 1175..1358 | 100 | -> | Plus |
| 3R | 14081334..14081431 | 1359..1456 | 100 | -> | Plus |
| 3R | 14079346..14079638 | 452..744 | 100 | -> | Plus |
| 3R | 14081497..14081898 | 1457..1858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:46 Download gff for
BS25514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9906726..9906909 | 1175..1358 | 100 | -> | Plus |
| arm_3R | 9907056..9907153 | 1359..1456 | 100 | -> | Plus |
| arm_3R | 9905068..9905360 | 452..744 | 100 | -> | Plus |
| arm_3R | 9905961..9906185 | 745..969 | 100 | -> | Plus |
| arm_3R | 9906433..9906637 | 970..1174 | 100 | -> | Plus |
| arm_3R | 9892365..9892584 | 17..236 | 100 | -> | Plus |
| arm_3R | 9892660..9892874 | 237..451 | 100 | -> | Plus |
| arm_3R | 9907219..9907620 | 1457..1858 | 100 | | Plus |
BS25514.pep Sequence
Translation from 16 to 1857
> BS25514.pep
MMDGYAQEWPRLTHTDNGLAMDQLGGDLPLDVGFEPQTRARSNTWPCPRP
ENFVEPTDELDSTKASNQQLAPGDSQQAIQNANAAKKNSSRRNAWGNLSY
ADLITHAIGSATDKRLTLSQIYEWMVQNVPYFKDKGDSNSSAGWKNSIRH
NLSLHNRFMRVQNEGTGKSSWWMLNPEAKPGKSVRRRAASMETSRYEKRR
GRAKKRVEALRQAGVVGLNDATPSPSSSVSEGLDHFPESPLHSGGGFQLS
PDFRQRASSNASSCGRLSPIRAQDLEPDWGFPVDYQNTTMTQAHAQALEE
LTGTMADELTLCNQQQQGFSAASGLPSQPPPPPYQPPQHQQAQQQQQQQS
PYALNGPASGYNTLQPQSQCLLHRSLNCSCMHNARDGLSPNSVTTTMSPA
YPNSEPSSDSLNTYSNVVLDGPADTAALMVQQQQQQQQQQQLSASLEGQC
LEVLNNEAQPIDEFNLENFPVGNLECNVEELLQQEMSYGGLLDINIPLAT
VNTNLVNSSSGPLSISNISNLSNISSNSGSSLSLNQLQAQLQQQQQQQQA
QQQQQAQQQQQQHQQHQQQLLLNNNNNSSSSLELATQTATTNLNARVQYS
QPSVVTSPPSWVH*
BS25514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| foxo-PC | 613 | CG3143-PC | 1..613 | 1..613 | 3207 | 100 | Plus |
| foxo-PB | 613 | CG3143-PB | 1..613 | 1..613 | 3207 | 100 | Plus |
| foxo-PH | 619 | CG3143-PH | 1..619 | 1..613 | 3190 | 99 | Plus |
| foxo-PG | 622 | CG3143-PG | 1..622 | 1..613 | 3187 | 98.6 | Plus |
| foxo-PF | 622 | CG3143-PF | 1..622 | 1..613 | 3187 | 98.6 | Plus |
