BS25515.complete Sequence
1904 bp assembled on 2011-08-30
GenBank Submission: KX801780
> BS25515.complete
GAAGTTATCAGTCGACATGGACGCGGACAGGGGCGGCGGGCAGGAGACGA
AGGTGATATACCACATCGACGATGAGACGACGCCGTATCTGGTGAAGATC
CCCATTCCATCCGCCCAGGTGACGCTGCGCGATTTCAAGCTGGTGCTGAA
CAAGCAGAACAACAACTACAAGTACTTCTTCAAGTCAATGGACGCCGATT
TCGGTGTGGTCAAAGAGGAAATAGCCGACGACTCCACCATACTGCCCTGC
TTCAATGGGCGAGTGGTGTCCTGGCTGGTCTCCGCCGATGGTACCAATCA
GTCAGATAACTGCTCCGAGCTGCCAACCAGTGAGTGTGAATTGGGCATGG
GTCTGACCAACAGGAAGCTACAGCAGCAACAGCAGCAGCATCAGCAGCAG
CAACAACAACAGCAGCAGCAGCACCAGCAACAGCAACAACAACAGCAGCA
GCAGGTGCAGCCTGTCCAGCTGGCGCAGCAGCAACAGCAGCAGGTGCTCC
ATCACCAGAAGATGATGGGCAATCCGCTGCTGCAGCCGCCACCGCTCACA
TATCAATCGGCATCCGTGCTCTCCAGCGATCTGGACTCGACCAGTCTCTT
TGGCACCGAATCCGAATTGACGCTGGACCGCGACATGACCGACTATAGCA
GCGTTCAGCGATTGCAGGTGCGCAAGAAGCCGCAGAGGCGCAAAAAACGG
GCGCCCAGCATGTCGCGCACCTCCTCGTACAGCTCCATAACCGACTCGAC
CATGTCCCTAAATATCATTACCGTCTCCATCAACATGGAGGCGGTCAACT
TTCTGGGCATATCCATTGTCGGGCAATCGAATCGCGGCGGCGACGGCGGC
ATCTACGTGGGCAGCATCATGAAAGGCGGCGCAGTGGCACTCGATGGACG
CATCGAACCGGGCGACATGATCCTCCAAGTGAACGATGTCAACTTCGAGA
ACATGACCAACGACGAGGCGGTACGTGTGCTGAGAGAAGTCGTTCAGAAG
CCGGGACCCATCAAGCTGGTGGTGGCCAAGTGCTGGGACCCAAATCCCAA
GGGCTACTTCACCATTCCGCGCACGGAGCCGGTGCGACCCATCGATCCCG
GTGCTTGGGTGGCGCACACTCAGGCCCTCACATCGCACGACAGTATTATT
GCCGACATTGCGGAGCCGATTAAGGAGCGTCTGGACCAGAATAACCTCGA
GGAGATCGTTAAGGCGATGACGAAGCCGGACAGCGGCCTGGAGATCAGGG
ATCGCATGTGGCTAAAGATAACGATTCCCAATGCATTTATCGGCGCCGAT
GCGGTCAATTGGGTGCTGGAGAATGTGGAGGATGTTCAGGATAGGCGGGA
GGCGCGAAGGATCGTCTCGGCGATGCTGCGCAGCAATTACATCAAGCATA
CGGTCAATAAGTTGACCTTCTCGGAGCAGTGCTACTACGTGGTGAACGAG
GAGCGCAATCCCAATCTGTTGGGCCGAGGACATCTGCATCCGCACCAGCT
GCCGCACGGGCATGGCGGCCATGCGCTTAGCCATGCGGACACCGAGAGCA
TCACCAGCGACATCGGGCCGCTACCGAACCCGCCCATTTATATGCCATAT
TCGGCCACGTACAATCCAAGTCACGGCTATCAGCCGATCCAGTACGGCAT
CGCCGAGCGACACATCTCGTCGGGATCGAGTAGCAGCGATGTGCTGACCA
GCAAGGATATCTCGGCGTCGCAGAGCGACATCACCTCGGTGATCCATCAG
GCCAACCAGCTGACCATCGCCGCTCATGGCTCTAACAAATCATCCGGCTC
CTCCAATCGGGGCGGCGGCGGAGGCGGTGGCGGTGGCGGCAACAATACCA
ACGATCAGGACGTATCCGTATTTAATTACGTATTGTAGAAGCTTTCTAGA
CCAT
BS25515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsh-RA | 1872 | CG18361-PA | 1..1872 | 17..1888 | 9360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsh-RA | 2844 | CG18361-RA | 474..2347 | 17..1890 | 9370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11356354..11358227 | 17..1890 | 9370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:05:59 has no hits.
BS25515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:34 Download gff for
BS25515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsh-RA | 474..2345 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:56 Download gff for
BS25515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsh-RA | 474..2345 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:28 Download gff for
BS25515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsh-RA | 474..2345 | 17..1888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:28 Download gff for
BS25515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11356354..11358225 | 17..1888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:56 Download gff for
BS25515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11250387..11252258 | 17..1888 | 100 | | Plus |
BS25515.pep Sequence
Translation from 16 to 1887
> BS25515.pep
MDADRGGGQETKVIYHIDDETTPYLVKIPIPSAQVTLRDFKLVLNKQNNN
YKYFFKSMDADFGVVKEEIADDSTILPCFNGRVVSWLVSADGTNQSDNCS
ELPTSECELGMGLTNRKLQQQQQQHQQQQQQQQQQHQQQQQQQQQQVQPV
QLAQQQQQQVLHHQKMMGNPLLQPPPLTYQSASVLSSDLDSTSLFGTESE
LTLDRDMTDYSSVQRLQVRKKPQRRKKRAPSMSRTSSYSSITDSTMSLNI
ITVSINMEAVNFLGISIVGQSNRGGDGGIYVGSIMKGGAVALDGRIEPGD
MILQVNDVNFENMTNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTI
PRTEPVRPIDPGAWVAHTQALTSHDSIIADIAEPIKERLDQNNLEEIVKA
MTKPDSGLEIRDRMWLKITIPNAFIGADAVNWVLENVEDVQDRREARRIV
SAMLRSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPHGHG
GHALSHADTESITSDIGPLPNPPIYMPYSATYNPSHGYQPIQYGIAERHI
SSGSSSSDVLTSKDISASQSDITSVIHQANQLTIAAHGSNKSSGSSNRGG
GGGGGGGGNNTNDQDVSVFNYVL*
BS25515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsh-PA | 623 | CG18361-PA | 1..623 | 1..623 | 3244 | 100 | Plus |
| CG32767-PG | 1280 | CG32767-PG | 402..489 | 105..193 | 167 | 43.8 | Plus |
| CG32767-PH | 1281 | CG32767-PH | 402..489 | 105..193 | 167 | 43.8 | Plus |
| CG15772-PB | 259 | CG15772-PB | 47..143 | 115..215 | 164 | 44.7 | Plus |
| CG15772-PA | 259 | CG15772-PA | 47..143 | 115..215 | 164 | 44.7 | Plus |
| CG15772-PB | 259 | CG15772-PB | 33..85 | 112..164 | 154 | 62.3 | Plus |
| CG15772-PA | 259 | CG15772-PA | 33..85 | 112..164 | 154 | 62.3 | Plus |
