BS25518.complete Sequence
2147 bp assembled on 2011-09-19
GenBank Submission: KX803219
> BS25518.complete
GAAGTTATCAGTCGACATGTCCAGCGAGGAAGACAAACCGCCGGCGCCGC
CTGTGCGTCTCACCAGCAACCGGGGCGGCAATGAACGATCGGGAGGAGGA
GTGGGCGTCGGTGGCGGAGGACTGGGAGGTGGCGGTATGGGAGATGTACC
GCCCGACATGCGTCCGCTGCCCAAGGAACCCGACGACTCCGATCGGAAGA
AGAAAACGCTGAAGAGCAAGATCAAAGGATCGAAGCCCTCGCACACGGAC
TCCAAGCCGAACATCTCCTATCCCACGAACTTTGAGCACACGGTCCATGT
GGGATTCGATGCTGTCACCGGCGAGTTTACCGGCATGCCGGAGGCATGGG
CGCGACTCCTGATGAACTCCAACATCAGCAAGCAGGAGCAGAAGAAGAAT
CCCCAGGCCGTGCTGGATGTGCTCAAGTGGTTCGACAACACTACCAAACA
GAGGCCAAGTTCCAAGTACATGACAAATGCCATTACGACGCATTCAGGTT
CATCGCTCAGCCGCGTCAGCAGCAGCAGTCCGAGCAGCACGCCAACAGAC
TCGGAGCTGCACGGCTCCAACAGCGGAGGTAACCTGATTGGCGTCCAGTT
GGGCAGTATGACTCTGGGTCCCAACGCCAACAACGTGGCCGTTGCTGGGC
AAATTCTGGGCAACCACTACCAACAGCAGCAGCAGCACCTCCTTCAGCAG
CAGCAGCCACTTTTGCATCAGAACCACAACCAGCATCACATGGGCATAAG
TCAATCGCACTCGTACAACTTTGTCGGACACACGGTCTCCTCATCCACAT
CGCAACATTCATCCGCTAACGAGGACGATATGCTGGGACCACAGCACCCG
CAGCAACAGCCGCCACCTCCACCGGTGGCCTCTAGGCCTGAGCGCACGAA
ATCCATCTACACGCGGCCAATCGAGGATCTACAGCCAGCCATCATCCCAA
TGCCAGTGGCGCCAGCAACCACGCCTGCAACGCCGCTGCAAAATCATAGG
ACGCCAGGCGGAATATCAGCACCAGCGGCATCGCCAATGATGCACAACAA
TGCCACGACGACGCTGGACAAGAATAAAAACAATGCAAATCTGTACACAC
CGGAACCCACGGTAGCCCAAGTGTCAGCCGGTGGCCCAAGTTCTCAAGTG
GCTGGAAACCAAATCGCCGTGCCCCAGGCAGCTGTGGCTCCGGCTGCAAC
GCCCAACACGAGGGCAGCCAACGCCAAGAAGAAAAAGATGTCCGACGAGG
AGATCTTGGAGAAACTGCGCACCATTGTCTCTGTGGGCGATCCAAATCGA
AAGTACACCAAGATGGAGAAGATTGGCCAGGGTGCCTCTGGCACAGTGTA
TACTGCAATTGAATCCTCGACCGGCATGGAGGTGGCCATCAAGCAGATGA
ACCTGTCACAGCAGCCTAAAAAGGAGCTCATCATCAACGAGATCCTTGTG
ATGCGGGAGAACAAACACCCAAATGTAGTCAACTATCTTGACAGCTACCT
CGTGTCTGAGGAACTGTGGGTGGTCATGGAGTACCTGCCCGGCGGCTCTC
TTACCGACGTCGTCACCGAGACCTGCATGGACGAGGGCCAGATCGCAGCT
GTTTGCCGAGAAGTGCTGCAAGCTCTGGAGTTCCTTCACGCCAACCAGGT
TATCCATCGCGACATCAAGAGTGATAACATTCTGCTGGGCCTTGACGGCT
CTGTCAAGCTGACTGACTTTGGTTTCTGTGCGCAAATATCGCCGGAGCAA
TCCAAACGCACAACGATGGTAGGCACACCCTACTGGATGGCTCCCGAGGT
CGTCACCCGGAAACAGTACGGACCCAAGGTGGACCTTTGGTCTTTGGGCA
TTATGGCCATAGAAATGGTCGAGGGCGAACCGCCGTACCTAAACGAGAAT
CCGCTTAAAGCCTTGTACCTCATTGCCACCAATGGCAAGCCAGAGATTAA
AGAAAAAGACAAGCTGTCCTCAGCATTTCAGGACTTCCTCGACCAGTGTC
TGGAGGTGGAGGTGGATCGGCGAGCAAGCGCATTGGACTTGCTAAAGCAT
CCCTTCCTAAAACTGGCCCGTCCATTGGCCAGTCTGACTCCCTTGATCAT
GGCCGCAAAGGAGGCTACCAAGGGCAACTGAAAGCTTTCTAGACCAT
BS25518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak-RJ | 2115 | CG10295-PJ | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| Pak-RE | 2115 | CG10295-PE | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| Pak-RB | 2115 | CG10295-PB | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak-RJ | 4827 | CG10295-RJ | 563..2678 | 16..2131 | 10580 | 100 | Plus |
| Pak-RE | 3163 | CG10295-RE | 265..2380 | 16..2131 | 10580 | 100 | Plus |
| Pak-RB | 3168 | CG10295-RB | 270..2385 | 16..2131 | 10580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6358283..6359025 | 1089..1831 | 3715 | 100 | Plus |
| 3R | 32079331 | 3R | 6356747..6357340 | 495..1088 | 2970 | 100 | Plus |
| 3R | 32079331 | 3R | 6359090..6359310 | 1827..2047 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 6356433..6356611 | 332..510 | 850 | 98.3 | Plus |
| 3R | 32079331 | 3R | 6355020..6355180 | 16..176 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 6355265..6355421 | 176..332 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 6359380..6359465 | 2046..2131 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 16451433..16451820 | 1902..1512 | 250 | 72.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:51:14 has no hits.
BS25518.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:12 Download gff for
BS25518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 270..2383 | 17..2130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:00 Download gff for
BS25518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 270..2383 | 17..2130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:00 Download gff for
BS25518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pak-RB | 271..2384 | 17..2130 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:00 Download gff for
BS25518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6355021..6355180 | 17..176 | 100 | -> | Plus |
| 3R | 6355266..6355420 | 177..331 | 100 | -> | Plus |
| 3R | 6356433..6356598 | 332..497 | 100 | -> | Plus |
| 3R | 6356750..6357340 | 498..1088 | 100 | -> | Plus |
| 3R | 6358283..6359022 | 1089..1828 | 100 | -> | Plus |
| 3R | 6359092..6359310 | 1829..2047 | 100 | -> | Plus |
| 3R | 6359382..6359464 | 2048..2130 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:00 Download gff for
BS25518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2182155..2182320 | 332..497 | 100 | -> | Plus |
| arm_3R | 2180743..2180902 | 17..176 | 100 | -> | Plus |
| arm_3R | 2180988..2181142 | 177..331 | 100 | -> | Plus |
| arm_3R | 2182472..2183062 | 498..1088 | 100 | -> | Plus |
| arm_3R | 2184005..2184744 | 1089..1828 | 100 | -> | Plus |
| arm_3R | 2184814..2185032 | 1829..2047 | 100 | -> | Plus |
| arm_3R | 2185104..2185186 | 2048..2130 | 100 | | Plus |
BS25518.pep Sequence
Translation from 16 to 2130
> BS25518.pep
MSSEEDKPPAPPVRLTSNRGGNERSGGGVGVGGGGLGGGGMGDVPPDMRP
LPKEPDDSDRKKKTLKSKIKGSKPSHTDSKPNISYPTNFEHTVHVGFDAV
TGEFTGMPEAWARLLMNSNISKQEQKKNPQAVLDVLKWFDNTTKQRPSSK
YMTNAITTHSGSSLSRVSSSSPSSTPTDSELHGSNSGGNLIGVQLGSMTL
GPNANNVAVAGQILGNHYQQQQQHLLQQQQPLLHQNHNQHHMGISQSHSY
NFVGHTVSSSTSQHSSANEDDMLGPQHPQQQPPPPPVASRPERTKSIYTR
PIEDLQPAIIPMPVAPATTPATPLQNHRTPGGISAPAASPMMHNNATTTL
DKNKNNANLYTPEPTVAQVSAGGPSSQVAGNQIAVPQAAVAPAATPNTRA
ANAKKKKMSDEEILEKLRTIVSVGDPNRKYTKMEKIGQGASGTVYTAIES
STGMEVAIKQMNLSQQPKKELIINEILVMRENKHPNVVNYLDSYLVSEEL
WVVMEYLPGGSLTDVVTETCMDEGQIAAVCREVLQALEFLHANQVIHRDI
KSDNILLGLDGSVKLTDFGFCAQISPEQSKRTTMVGTPYWMAPEVVTRKQ
YGPKVDLWSLGIMAIEMVEGEPPYLNENPLKALYLIATNGKPEIKEKDKL
SSAFQDFLDQCLEVEVDRRASALDLLKHPFLKLARPLASLTPLIMAAKEA
TKGN*
BS25518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pak-PJ | 704 | CG10295-PJ | 1..704 | 1..704 | 3663 | 100 | Plus |
| Pak-PE | 704 | CG10295-PE | 1..704 | 1..704 | 3663 | 100 | Plus |
| Pak-PB | 704 | CG10295-PB | 1..704 | 1..704 | 3663 | 100 | Plus |
| Pak-PA | 704 | CG10295-PA | 1..704 | 1..704 | 3663 | 100 | Plus |
| Pak-PC | 704 | CG10295-PC | 1..704 | 1..704 | 3663 | 100 | Plus |
