BS25522.complete Sequence
2402 bp assembled on 2011-08-25
GenBank Submission: KX805613
> BS25522.complete
GAAGTTATCAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAA
TTTCTTCATTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAG
CAAATGCAATTGTTGCACGCACCGGCGTCCACGCATCCGCATCCACATCC
GCATCAGCATCCGCAGCATTCGGCAGCGTCAGCCGCCGCCTATCAGGCCA
TGCAGGTGCACCAGCAGCAACACCAACAGCAACAGCAGGCGGCCGTCTTT
CACCACCAGGTTGCAGCCATTGCCGCCCAGCAGCAACAACAGCAACAGCA
GGCCCAAGTGCAGCATCAGCAACAAATGCAGCAGCAGTTCCACTACCAAG
CCCAGGCTCAAGCTCAAGCGCAGGCCATGCTGCAGACGTATATGCAACTT
CAGGTGAACAGTGCTGTAGGTGTGAGCACCGCCCCCGCCACGCCTACCAA
ACCGGTAGCCGCCCAGATTCCGGGCGCGATCTCCGGACCGATTGCGGGTC
CGGTTCCTGTATCTGTGCCGACACAGTTCTTCACGGCGCCGAGCACTCCA
TTGACCATCATTCCGGCGGCGGCGGTGGCCTCGTCGGCCATGTTCGCTAC
CGCGGCCACGCCCACTTCGGCGGCCACCACTCCGACCAATAATCGCGGAA
GCGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTCCGACAAT
AACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGGGCACTGT
GCTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTGCGCAACA
TTCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCATTCCGTTT
GGACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGGCTTTCAT
CGAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGTTACACAG
TAACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTTTTCTAAT
CATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCGCCCATAG
CGACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCCCTTAGCG
CCGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGACAGCAAC
AGCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGGGCGGCAA
CACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATTGTCGAGT
CCTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTTCCAGCGC
TACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATTCATTCCA
GGCCCTCATCCAATATCCGGACGCCAATTCCGCCCAGCACGCCAAGTCGC
TCCTGGACGGGCAGAATATATACAACGGTTGCTGCACGTTGCGTATTGAT
AACAGCAAGCTGACGGCTCTGAATGTTAAGTACAACAACGACAAATCGCG
CGACTTCACTAACCCCGCTCTGCCACCTGGTGAACCGGGAGTGGATATCA
TGCCCACCGCCGGCGGACTGATGAACACCAATGATTTGCTTTTGATCGCC
GCCCGTCAGCGACCTTCTCTCTCAGGTGATAAAATAGTCAACGGCCTGGG
CGCCCCCGGAGTCCTGCCGCCCTTTGCCTTGGGCCTGGGCACTCCACTGA
CCGGTGGATACAACAACGCACTGCCCAACTTAGCAGCTTTCTCGCTGGCC
AACAGTGGCGCCCTGCAGACGACCGCTCCTGCAATGCGAGGTTACTCGAA
TGTCTTGCTTGTCTCGAATTTAAATGAGGAGATGGTCACGCCTGATGCTC
TCTTTACCCTTTTTGGTGTATACGGCGATGTGCAACGTGTAAAGATTCTG
TACAACAAGAAGGACTCGGCACTCATACAAATGGCGGAGCCCCAGCAAGC
TTATTTGGCCATGTCTCACCTTGATAAATTACGTTTATGGGGAAAGCCGA
TACGTGTGATGGCAAGCAAACACCAGGCCGTCCAGCTGCCCAAGGAGGGA
CAGCCGGACGCAGGACTCACACGTGACTACTCGCAAAATCCGTTGCACCG
CTTCAAGAAACCGGGAAGCAAGAACTACCAGAACATCTATCCGCCGTCGG
CGACACTACATTTAAGCAACATTCCCTCATCCTGCTCTGAGGATGACATC
AAAGAAGCTTTCACCTCAAACAGCTTTGAAGTTAAGGCATTCAAATTTTT
CCCGAAGGACCGTAAAATGGCACTGCTTCAACTGTTGTCCGTGGAGGAGG
CTGTCCTAGCACTGATTAAGATGCACAACCACCAGCTGTCCGAGTCGAAT
CACCTGCGTGTAAGCTTCTCGAAGTCGAACATCTAGAAGCTTTCTAGACC
AT
BS25522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RR | 2370 | CG31000-PR | 1..2370 | 17..2386 | 11850 | 100 | Plus |
| heph-RO | 2370 | CG31000-PO | 1..2370 | 17..2386 | 11850 | 100 | Plus |
| heph-RH | 2370 | CG31000-PH | 1..2370 | 17..2386 | 11850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RR | 3496 | CG31000-RR | 291..2663 | 16..2388 | 11865 | 100 | Plus |
| heph-RO | 3496 | CG31000-RO | 253..2625 | 16..2388 | 11865 | 100 | Plus |
| heph-RH | 3496 | CG31000-RH | 253..2625 | 16..2388 | 11865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31932072..31932616 | 643..99 | 2725 | 100 | Minus |
| 3R | 32079331 | 3R | 31866118..31866436 | 1352..1034 | 1595 | 100 | Minus |
| 3R | 32079331 | 3R | 31865751..31866038 | 1637..1350 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 31873834..31874100 | 1033..767 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 31852592..31852809 | 2175..1958 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 31865132..31865327 | 1831..1636 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 31851853..31851987 | 2388..2254 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31881748..31881871 | 767..644 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 31857879..31857972 | 1958..1865 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 31959035..31959119 | 100..16 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 31852097..31852175 | 2254..2176 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 31864595..31864632 | 1867..1830 | 190 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6912 | 89..348 | 287 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2548 | 133..351 | 276 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6942 | 134..348 | 275 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2531 | 106..355 | 272 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6907 | 168..403 | 250 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6886 | 202..349 | 237 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6891 | 159..336 | 234 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2442 | 209..335 | 233 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 203..404 | 228 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2713 | 133..410 | 225 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2519 | 147..367 | 205 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6956 | 99..335 | 205 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2428 | 196..336 | 196 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2977 | 209..372 | 194 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7091 | 99..433 | 188 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2470 | 159..336 | 182 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1043..1141 | 141..238 | 167 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1152 | 128..237 | 157 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1645 | 209..297 | 154 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1162 | 181..301 | 150 | 62.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1120 | 202..238 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2662 | 171..237 | 121 | 66.2 | Plus |
BS25522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 15:42:28 Download gff for
BS25522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RR | 292..2661 | 17..2386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:08 Download gff for
BS25522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RH | 251..2620 | 17..2386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:55 Download gff for
BS25522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RH | 254..2623 | 17..2386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:55 Download gff for
BS25522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31864597..31864630 | 1832..1865 | 100 | <- | Minus |
| 3R | 31865132..31865325 | 1638..1831 | 100 | <- | Minus |
| 3R | 31851855..31851987 | 2254..2386 | 100 | <- | Minus |
| 3R | 31852098..31852175 | 2176..2253 | 100 | <- | Minus |
| 3R | 31852592..31852808 | 1959..2175 | 100 | <- | Minus |
| 3R | 31857879..31857971 | 1866..1958 | 100 | <- | Minus |
| 3R | 31865751..31866036 | 1352..1637 | 100 | <- | Minus |
| 3R | 31866119..31866436 | 1034..1351 | 100 | <- | Minus |
| 3R | 31873834..31874099 | 768..1033 | 100 | <- | Minus |
| 3R | 31881748..31881871 | 644..767 | 100 | <- | Minus |
| 3R | 31932072..31932614 | 101..643 | 100 | <- | Minus |
| 3R | 31959035..31959118 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:08 Download gff for
BS25522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27699556..27699821 | 768..1033 | 100 | <- | Minus |
| arm_3R | 27707470..27707593 | 644..767 | 100 | <- | Minus |
| arm_3R | 27691473..27691758 | 1352..1637 | 100 | <- | Minus |
| arm_3R | 27691841..27692158 | 1034..1351 | 100 | <- | Minus |
| arm_3R | 27677577..27677709 | 2254..2386 | 100 | <- | Minus |
| arm_3R | 27677820..27677897 | 2176..2253 | 100 | <- | Minus |
| arm_3R | 27678314..27678530 | 1959..2175 | 100 | <- | Minus |
| arm_3R | 27683601..27683693 | 1866..1958 | 100 | <- | Minus |
| arm_3R | 27690319..27690352 | 1832..1865 | 100 | <- | Minus |
| arm_3R | 27690854..27691047 | 1638..1831 | 100 | <- | Minus |
| arm_3R | 27757794..27758336 | 101..643 | 100 | <- | Minus |
| arm_3R | 27784757..27784840 | 17..100 | 100 | | Minus |
BS25522.pep Sequence
Translation from 16 to 2385
> BS25522.pep
MMSCPIPMPMPISSLHKSEFEPVNIGVKQMQLLHAPASTHPHPHPHQHPQ
HSAASAAAYQAMQVHQQQHQQQQQAAVFHHQVAAIAAQQQQQQQQAQVQH
QQQMQQQFHYQAQAQAQAQAMLQTYMQLQVNSAVGVSTAPATPTKPVAAQ
IPGAISGPIAGPVPVSVPTQFFTAPSTPLTIIPAAAVASSAMFATAATPT
SAATTPTNNRGSDELLSQAAVMAPASDNNNQDLATKKAKLEPGTVLAGGI
AKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADE
ISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQ
SPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAG
GPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQY
PDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNP
ALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVL
PPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSNVLLVS
NLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMS
HLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPG
SKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRK
MALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI*
BS25522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-PR | 789 | CG31000-PR | 1..789 | 1..789 | 4035 | 100 | Plus |
| heph-PO | 789 | CG31000-PO | 1..789 | 1..789 | 4035 | 100 | Plus |
| heph-PH | 789 | CG31000-PH | 1..789 | 1..789 | 4035 | 100 | Plus |
| heph-PW | 799 | CG31000-PW | 1..799 | 1..789 | 3974 | 97.8 | Plus |
| heph-PV | 608 | CG31000-PV | 29..608 | 210..789 | 2959 | 100 | Plus |
