BS25523.complete Sequence
2441 bp assembled on 2011-09-19
GenBank Submission: KX800600
> BS25523.complete
GAAGTTATCAGTCGACATGTGCGACTTTGACGCTTTGTGGGCGGATGTAC
TGAGAATCTTTCCGGTTTTGGGTGGAGCGAACGCTGTATCCAATGATCCG
GTTGAGGAGAATGTATTCCAAAATGTTCGCCAGCACCTGATGGTGTTGGG
CAGCATAGACACCTTCGCGGCGGTTGTGGACCTGGAAATCCAGTCGACTA
TTCGGAATGTCCTGGTGCCCAAGTTCTGGAAGCACATCCACGACGGCTTG
GTCTCGTCTAAATTGCAGGGCTGGATTAACGACCAAGCTCTGGCCATAGA
AGCACTGCCCGATAAGAACGGACTGTTCACCCAGTTCATCGACGCCATCA
ATGAGCTGCATGACAGCTTTCAGAGCCTGATGCAGGTGAAGCCCAGGCTG
ATCCAGCTAGTTGGAGCTGAGACAAAGCCCACCGCAAAGACGGTGAAGCT
CATGCAGGAGGAAGGCATTAAGAACTGCTTAAGGGACTGCTTGCTGGCTC
AACTGCCACCCAATTTCAGTGTGGTCGTTGGGGCCTTCTACTGGGTGCAC
TTTAAGCTCTTCACCAAGGCCTCAAATCTCGCATTGACCACAGTTGACTC
TGATGTTTTCGATGAGCTCCTCTGCGTTGGCTGCAACTTCGAAGCAGAGC
AATGCTGCTGCCAAAGGCTGACGGATATGGTTAACAAGACAAACATGAAG
CTCTTCGAGATGAACCTCATTGACCGTCTAACTGGGAGTGCTTTAACCGC
TCTCATCAAGCTTAAAATCAAGGAGCACATCAGCGATACATGCATGGGAA
TCTTCGACAGAAGTCATCTTAAGCAACTGGAAACTTGGCTATCGGATGTC
ATAATGTCCTGGCTCACAAACATATTCACGGAATGGAAGTCTAAGGATAG
CATAAGCGATATCGAAGTTCCCGAGTCTGTAAAATCCTTCAAAGTCAAAC
TGACTTACTTTATGTACGAAACGTTTGCCCAAAGCGTTATTGGTCAGTTC
TTCAGCATTATAATTGACTATCCCGATTCCATTCCGGCTATAGATGACTT
AAAGATTTGCATGGAGAAAATAGATATGCGAGTCTACCTCACTGAATCCC
TTAGGAACTCGCTAGAGGCAAGGATTCTGCATCCTGGAGTCAACACCATG
GACATATTAACGGGTTACGTGGCAGCCATCAAAGCTATTCGCCATCTGGA
TAGTACCGGAGTCATCTTAGAGATGGTAACTGCTCCAATCAAAGATTACC
TGCGGAAACGAAACGACACAGTGCGACGCGTAGTCACTGGGTTGACTGAA
GAGGGGCCCACGGACTTATCCGAGGAACTCGCCAAGGGAGAAACAATTAA
GGAATGCAAGGACTCGGGTACCGATGAGTTCAGCAACTGGGAAAATTGGC
AACCCGATCCGTTTGGTATAGATGCCAGCATTATGCAGTACAACAGCTCG
CGGAAGATGAGATCGGCCGACATTATATCGATGGTTGTAGACATATACGG
CAGTAAGGAGTTGTTTATGACAGAGTATCGCAATCTAATGGCGGACAGAC
TGCTGGCCCAGTTAGATTTTAATTCCGAAAAAGAAATTCGAAATCTGGAA
CTGCTGAAAATCCGCTTTGGCGAATCGCTGCTGCACAGCTGCGAGGTGAT
GTTGAAAGACGTAACCGACTCCAAGCGAATTAACGCGCACATCCACAGCG
ATGGCGACCGAACTGAAAATCAGTTGTTCGACATCTCCTCGCTGATTGTT
TCTGCTCAGTTTTGGCCGTCCTTCAATAAAGAAAGCCTCCAACTTCCTGA
GGAGATTGAGAATGAGTTCAAGAAGTACACCAAGGCCTACGAGGCATACA
AGGGCAACCGTACGCTCAACTGGCGTACAGTGACTGGCCGTGTAAATATT
GAAATCGAGATCGGTGACCGGACCATGGAAATGGTTGTGAGCCCCATTTT
GGCGGTTATTATATACCACTTTCAAACTAAGAATGAATGGACTATCGAGG
ATCTTAGTTCCATTACGAAAGTTCCAGCGTCTGCACTGCGGCGTCGTCTG
AGTTTTTGGCAAAACCACGGATTGATCTCGGAAACGACACCCGGAATATT
CACGCTGCTGGAAAAGGAATCGGAGAAGTCTCAGTACGAGGACATGAGTC
TGGCAGAAGCTGACGAAGAGGATTTGGAATCCGCAATGGCTTCTGCCAGC
GATCAAAGGGAAGAAGAACTCCAAGTTTTTTGGTCCTATATTGTTGGAAT
GCTCACGAATCTTGACTCCATGCCAATTGACCGAATCCACCAGATGCTGA
AGCTGTTCGCCTCCCACAGCGGCGGAGTGGAGTTTACTCAGGATGAGCTG
AAACACTTTCTCCAGCGAAAAGTCAGGGAGCACAAGCTAATATTCTCGGG
TGGAGTTTACCAATTGGCCAAATAAAAGCTTTCTAGACCAT
BS25523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mr-RA | 2409 | CG3060-PA | 1..2409 | 17..2425 | 12045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mr-RA | 2555 | CG3060-RA | 79..2487 | 17..2425 | 12045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23973759..23974468 | 1016..1725 | 3520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 23972632..23973149 | 79..596 | 2590 | 100 | Plus |
| 2R | 25286936 | 2R | 23974513..23974776 | 1719..1982 | 1320 | 100 | Plus |
| 2R | 25286936 | 2R | 23974842..23975085 | 1983..2226 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 23973205..23973444 | 596..835 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 23975140..23975340 | 2225..2425 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 23973520..23973700 | 836..1016 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 23972509..23972571 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:40 has no hits.
BS25523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:25 Download gff for
BS25523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 77..2483 | 17..2423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:03 Download gff for
BS25523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 79..2485 | 17..2423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:43 Download gff for
BS25523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 79..2485 | 17..2423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:43 Download gff for
BS25523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23973206..23973444 | 597..835 | 100 | -> | Plus |
| 2R | 23973520..23973700 | 836..1016 | 100 | -> | Plus |
| 2R | 23972509..23972571 | 17..79 | 100 | -> | Plus |
| 2R | 23972633..23973149 | 80..596 | 100 | -> | Plus |
| 2R | 23973760..23974461 | 1017..1718 | 100 | -> | Plus |
| 2R | 23974513..23974776 | 1719..1982 | 100 | -> | Plus |
| 2R | 23974842..23975083 | 1983..2224 | 100 | -> | Plus |
| 2R | 23975140..23975338 | 2225..2423 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:03 Download gff for
BS25523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19860032..19860094 | 17..79 | 100 | -> | Plus |
| arm_2R | 19860156..19860672 | 80..596 | 100 | -> | Plus |
| arm_2R | 19860729..19860967 | 597..835 | 100 | -> | Plus |
| arm_2R | 19861043..19861223 | 836..1016 | 100 | -> | Plus |
| arm_2R | 19861283..19861984 | 1017..1718 | 100 | -> | Plus |
| arm_2R | 19862036..19862299 | 1719..1982 | 100 | -> | Plus |
| arm_2R | 19862365..19862606 | 1983..2224 | 100 | -> | Plus |
| arm_2R | 19862663..19862861 | 2225..2423 | 100 | | Plus |
BS25523.pep Sequence
Translation from 16 to 2424
> BS25523.pep
MCDFDALWADVLRIFPVLGGANAVSNDPVEENVFQNVRQHLMVLGSIDTF
AAVVDLEIQSTIRNVLVPKFWKHIHDGLVSSKLQGWINDQALAIEALPDK
NGLFTQFIDAINELHDSFQSLMQVKPRLIQLVGAETKPTAKTVKLMQEEG
IKNCLRDCLLAQLPPNFSVVVGAFYWVHFKLFTKASNLALTTVDSDVFDE
LLCVGCNFEAEQCCCQRLTDMVNKTNMKLFEMNLIDRLTGSALTALIKLK
IKEHISDTCMGIFDRSHLKQLETWLSDVIMSWLTNIFTEWKSKDSISDIE
VPESVKSFKVKLTYFMYETFAQSVIGQFFSIIIDYPDSIPAIDDLKICME
KIDMRVYLTESLRNSLEARILHPGVNTMDILTGYVAAIKAIRHLDSTGVI
LEMVTAPIKDYLRKRNDTVRRVVTGLTEEGPTDLSEELAKGETIKECKDS
GTDEFSNWENWQPDPFGIDASIMQYNSSRKMRSADIISMVVDIYGSKELF
MTEYRNLMADRLLAQLDFNSEKEIRNLELLKIRFGESLLHSCEVMLKDVT
DSKRINAHIHSDGDRTENQLFDISSLIVSAQFWPSFNKESLQLPEEIENE
FKKYTKAYEAYKGNRTLNWRTVTGRVNIEIEIGDRTMEMVVSPILAVIIY
HFQTKNEWTIEDLSSITKVPASALRRRLSFWQNHGLISETTPGIFTLLEK
ESEKSQYEDMSLAEADEEDLESAMASASDQREEELQVFWSYIVGMLTNLD
SMPIDRIHQMLKLFASHSGGVEFTQDELKHFLQRKVREHKLIFSGGVYQL
AK*
BS25523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mr-PA | 802 | CG3060-PA | 1..802 | 1..802 | 4132 | 100 | Plus |
