BS25525.complete Sequence
2570 bp assembled on 2011-09-19
GenBank Submission: KX806158
> BS25525.complete
GAAGTTATCAGTCGACATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTG
AGGTGGTCAGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATC
AACGCCGAGTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGAC
AGAGCTGCAGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCA
TGGAGGGCACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGC
CGAAGAACCAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGG
TAATTGTGTGTCCTTAAACAATTTGCTGCGCTGCTGCAAGATGAGCATCT
ACGAGTTCAAGACCAAAATTAAGCAGTGGTGCGACATGGCCAACCTGCCT
CAGGAGTTTGTCAACGAGATTGAGGATCTGGACCGCAAGTTCAGCATTAC
ATTCATGCTGCACAAGCGTTTCCGCATTATTATGGACATGATCTTCTCGT
GCCCGCCCAACGAGAAGAAGCACTCCAAGTACATTTCTCTGCATGGCAAC
CACGCCCACGGAAAGTGCTCGTACATCAAGCTGGACGACATCTGCTGGCG
CCTGTTTCTCTGCGCCAAGAACCAGAAGCCGAGCAACACCGTGGACCTGG
TGACATCCTACAATCTGATGATTTGCTGCATAGACCTGATATACAACAAT
GTGCTGGCCGAGAAGCGCACCGATCTCATCAACCCCAAATTCGAGGGCCT
GCCGAGCAACTGGACGGAGCTGGACTTTCGTCACAATCCGCACTGCATTT
TGTCCAACTTCTGTGACATGACCGAGGAGGCTAAAGCCATGAAGGCCACC
ACTTTCCGCCAGATCATGTCGAGCTTCTTTCAGGCTTCGACCATCTACGG
CAACAAGGACACTATGTTAGGCCTATTGGCTAACGAAAACTTCGAGCGCA
ACCTAAAGTCCCTCAACATCAGCTACGAGCAGTACGTCCTCAGCGTCGGC
GAATTCGACGAACGCATTCTGAGTGCCTACGATGCGGGGGAACACACTGC
CCTCAACGACCAGTCCCTGCGTCCGCCGGTTACTCCGCTTACCCGCAAGC
AAGATCTGCCTGCGCAGCCCGCGATGGCTGGCGATAAATTTGAGCCCGTC
CGCAACGCCACTAACAACGTGAAGCAGCTGAGCGCCTTCGGACGGATCAC
AGAACCCACGGACTTTGTCAAGCAAGCTGGCGAAGAGGTAATAGCCAAGC
TGCTTAGCATCATCGAGGAGATCGAGCAGAAATTCCTCGCCAAGTACCCG
TCAACGGAGGCGAAGAGTCGCTTCCAACTAGCGAAGTCCTTCTTCTTCTA
CCTGCTCGACCAGATCCTGCAGGCGGAAATTCGGAACAAGCCCGACATCG
ATCTCAAGCGACTGCTGGTGCAGAAGGTCTCCCTGGTCATCTTTAACATC
ACGCTGATGGCCTGCTGCGTGGAGCTGGTGCTGGAGGCCTACAAAACGGA
GCTCAAGTTCCCGTGGGTGCTCGACTGTTTCAGTATTAGCGCGTTCGAGT
TCCAAAAGATCATCGAGATCGTGGTGCGGCACGGCTCGCACGAAGGCTGT
TTGAACCGGTCGCTGATAAAGCACCTTAACTCCATCGAGGAGACGTGTCT
GGAGCGGCTGGCCTGGGCGAGGAACTCGACCGTCTGGGAAATGATCGCCT
CCGCCCAACTGCCGTTGCCCACGTGGCTCATGGTTAACCTCGACCGCGCC
GCCGGCCCCTTGCAGATATTCCTGCGCAAGGTGTACCTGCTTGGCTGGTT
GCGCATCCAGAAGCTGTGCTCGGAGCTGTCACTGTGCGAGAAGACGCCCG
AGAGCATCTGGCACATCTTTGAGCACTCGATCACCCACGAGACGGAATTG
ATGAAGGACCGCCACCTCGATCAAAATATTATGTGTGCAATATATATCTA
CATAAGAGTAAAGCGAATGGAGGACCCCAAGTTCAGTGACATTATGCGGG
CATATCGCAACCAGCCGCAGGCGGTGAACAGCGTCTACCGCGAGGTGTTC
ATCGACATCAACGAGGACGGGGAGCCAAAGGTGAAGGACATCATTCACTT
TTACAACCACACTTACGTGCCGCTGATGCGGCAGTTCGTCATCGACTACC
TAAACGTAACTCCGGACGTGAGTGGCCGGGCTTCGGATCTACAGCTCTCC
CCGCATCCGAAGGAACGGGCCGCCCAGCCCAAGAAGGTAACCCAGAGCCA
CTCGCTGTTCGTGTCGCAGATGTCCAAGAACGAGATACAGCAGTCGCCCA
ACCAGATGGTCTACAGTTTTTGCCGCAGCCCCGCCAAGGACCTTCAGGCT
ATGAACGAAAAGGTACGCGGCGGCAAGCGCATGCTGAGCTTTGGCGACGA
GCCCGGACTAGGTACAATGGCAGAGACGAAGCGCTCGAAAATCAGCCAGG
TCAAGGCCGTCATGGACGACCCTGAACTGCAGTCAGCCGAGCAGCAGACT
GCTGTTACCACGGAAGGTTGCGTAGGGGGCGAAGGAGGAGAACACGAGAC
ATAGAAGCTTTCTAGACCAT
BS25525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 2538 | CG7413-PA | 1..2538 | 17..2554 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-RA | 3619 | CG7413-RA | 692..3233 | 14..2555 | 12710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 798276..799013 | 1959..1222 | 3690 | 100 | Minus |
| X | 23542271 | X | 797761..798142 | 2339..1958 | 1910 | 100 | Minus |
| X | 23542271 | X | 799711..800069 | 889..531 | 1780 | 99.7 | Minus |
| X | 23542271 | X | 799315..799648 | 1222..889 | 1670 | 100 | Minus |
| X | 23542271 | X | 797476..797694 | 2555..2337 | 1095 | 100 | Minus |
| X | 23542271 | X | 800596..800788 | 206..14 | 965 | 100 | Minus |
| X | 23542271 | X | 800128..800318 | 534..344 | 955 | 100 | Minus |
| X | 23542271 | X | 800378..800519 | 345..204 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:40:18 has no hits.
BS25525.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:27 Download gff for
BS25525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 673..3210 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:06 Download gff for
BS25525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 695..3232 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:26 Download gff for
BS25525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf-RA | 695..3232 | 17..2554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:26 Download gff for
BS25525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 800128..800316 | 346..534 | 100 | <- | Minus |
| X | 800378..800517 | 206..345 | 100 | <- | Minus |
| X | 800597..800785 | 17..205 | 100 | | Minus |
| X | 797477..797692 | 2339..2554 | 100 | <- | Minus |
| X | 797762..798142 | 1958..2338 | 100 | <- | Minus |
| X | 798278..799013 | 1222..1957 | 100 | <- | Minus |
| X | 799316..799647 | 890..1221 | 100 | <- | Minus |
| X | 799711..800065 | 535..889 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:06 Download gff for
BS25525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 691510..691725 | 2339..2554 | 100 | <- | Minus |
| arm_X | 691795..692175 | 1958..2338 | 100 | <- | Minus |
| arm_X | 692311..693046 | 1222..1957 | 100 | <- | Minus |
| arm_X | 693349..693680 | 890..1221 | 100 | <- | Minus |
| arm_X | 693744..694098 | 535..889 | 100 | <- | Minus |
| arm_X | 694161..694349 | 346..534 | 100 | <- | Minus |
| arm_X | 694411..694550 | 206..345 | 100 | <- | Minus |
| arm_X | 694630..694818 | 17..205 | 100 | | Minus |
BS25525.pep Sequence
Translation from 16 to 2553
> BS25525.pep
MSEPDPQELGAEVVSGLVATSDDRLEMINAEYTNLCRDLNMDRQTELQGY
ETYLEVSQRCSMEGTASHWMCCAIYTACRRTSTPTVTGQNAVVKGNCVSL
NNLLRCCKMSIYEFKTKIKQWCDMANLPQEFVNEIEDLDRKFSITFMLHK
RFRIIMDMIFSCPPNEKKHSKYISLHGNHAHGKCSYIKLDDICWRLFLCA
KNQKPSNTVDLVTSYNLMICCIDLIYNNVLAEKRTDLINPKFEGLPSNWT
ELDFRHNPHCILSNFCDMTEEAKAMKATTFRQIMSSFFQASTIYGNKDTM
LGLLANENFERNLKSLNISYEQYVLSVGEFDERILSAYDAGEHTALNDQS
LRPPVTPLTRKQDLPAQPAMAGDKFEPVRNATNNVKQLSAFGRITEPTDF
VKQAGEEVIAKLLSIIEEIEQKFLAKYPSTEAKSRFQLAKSFFFYLLDQI
LQAEIRNKPDIDLKRLLVQKVSLVIFNITLMACCVELVLEAYKTELKFPW
VLDCFSISAFEFQKIIEIVVRHGSHEGCLNRSLIKHLNSIEETCLERLAW
ARNSTVWEMIASAQLPLPTWLMVNLDRAAGPLQIFLRKVYLLGWLRIQKL
CSELSLCEKTPESIWHIFEHSITHETELMKDRHLDQNIMCAIYIYIRVKR
MEDPKFSDIMRAYRNQPQAVNSVYREVFIDINEDGEPKVKDIIHFYNHTY
VPLMRQFVIDYLNVTPDVSGRASDLQLSPHPKERAAQPKKVTQSHSLFVS
QMSKNEIQQSPNQMVYSFCRSPAKDLQAMNEKVRGGKRMLSFGDEPGLGT
MAETKRSKISQVKAVMDDPELQSAEQQTAVTTEGCVGGEGGEHET*
BS25525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf-PA | 845 | CG7413-PA | 1..845 | 1..845 | 4440 | 100 | Plus |
| Rbf2-PA | 783 | CG5083-PA | 11..682 | 26..707 | 690 | 28.8 | Plus |
