BS25527.complete Sequence
2603 bp assembled on 2011-10-20
GenBank Submission: KX803803
> BS25527.complete
GAAGTTATCAGTCGACATGCCAGAAGCTTGTTGCTTTCTCCACTCCTCTT
TCATCCTCGTCATGTGTTTCTATCTGCAGATCAAGCGCAACATTCTACTG
GGCAAGCTGCCCTGCTCCAGCAACACCCAGTGCCTGCTTGCCAGCTACAC
TGTGCAATCCGAGTTGGGTGACTTTAACGCATTAGAACACCAGCCGGGCT
ATCTGAGCGGAATGCAGCTGCTCTGCGACCAGACAACGGAGGCGGAGCGG
AAGGTTGGAGAACTGCACAAGTTGCACCGTGGGCAGCTACCGGCGGACGC
GGAGTACAACTACCTGGAGCACGCTAAGCGATTGGAGCTATACGGGATTG
ACCTGCACAGGGCCACCGACTCCAACGGCAAGGAGCTGCAGCTGGGCGTA
TCGGCCGTCGGACTGCTCGTCTTCCAGCATTCATTGCGCGTGAACACTTT
CTCGTGGAGCAAGATGGTCAAGGTGTCGTTCAAGCGTAAGGACTTCTTCA
TCCAGTTGCGCCGCGAGCCCAGCGAGAACTACGATACTTTGCTGGGCTTT
GGGATGAGCAGCCACAAGCACGCCAAGGCGCTGTGGAAGTCCTGCGTGGA
GCACCACAGCTTCTTCCGCCTAAAGCGACCACACCGCCTCTCACGCTTCC
TCAATATCAGTTTGGGTAGCAAGTTTTACTACTCTGGACGCACAGAGCTA
CAGGCTGTGCAGGAGTCCAAACAGCGTGGTCGCATTCACAAGGTATTTGT
GCGCTCGCCGAGCAAGCGGCTTCTGGGAGCCGCCGGCGGTGTGGGAACGT
CAGGCTCCTCGGGCGGTACGCCTATGCAGCAGCACAGCGGCTCCGAGAGC
GCCAATTCCCACAACAACGGAAAGCCAGCCGGCGCAGGAACCATACTGAC
CATTACAAAGACAAGCCGCCCGCACGATAACAAGGTCACCTCCAAGGAGG
CCGATTCCATGCCGCGCAAGGCGTGGGAGCAGCAGAGCGACGAGTATGAC
ATTCAGCTCGACGTCGGTTTTATTGAACAGTGCACCCGACGCTTCGAGTC
TGCATCCCCGTCGCCCATGCCGCCCGCCTACAGCTCCGGCCAGCACAGTC
CAATTCTACTGCCAACAACCATCGCGGACGCCGTGGGTCATCAGCAGCCG
GAAAGCGGCAGCGACCTCATCACCATTCGTTTGCAGGCCGACGAGCAGGG
ACGCTATGGTTTCAACGTGAAGGGTGGAGTGGATTTGAGCCTGCCCGTTC
AGGTGTCAAAAGTGGTACCCCATACGCCCGCTGATCGTTGCACTCCGCGA
GTCTGCGAGGGCGACGAGGTACTCATGATTAATGGCCGGGATGTGCACGG
CCTGCGTCACGAGCAGGTGGTGGCCATGATTCGTGATTGCCGTCATCAAG
CCAGCGGCGAATTGCTACTGACGGTGCGGCCCCAGCGCTCGGCCCCTCTG
CTCCTTGAGGAGGAGCCGTTGTACCAGTACGTCCCGGAGAGCGATGAGAT
CGGATCACACTCTAATCTGCTCGATGGGGATGCTTTGTTTACCCAGAGCC
TGCTGCTGCTCAGCGATGGCTTGGCGTCTGGCGCCCTGTTGGCGCAGTAT
GAGCTCATGTACAGGAAGAACCCGGATCTGGCCATTACTGAGGCTCGGAA
GCCGGCGAACGCGCCCAAAAACCGATACCGAGACATATCACCATATGACT
GCACCCGGGTATCTCTGGTCAACTCGCTCACAGGCGACTACATCAACGCC
AACTACGTAAACATGGAGATTCCCGGCGGAGCGGTAAACCGATATATTGC
CACCCAGGGACCTCTGGCCAGCACCACGACGGACTTTTGGCGCATGGTAC
AGCAAGAGAGCAGTCATCTCCTGGTGATGCTAACGACCGTAATGGAGTCT
GGTCGCCAGAAATGCCATCAGTATTGGCCGGTGACGGGTGAGGAGCTTCA
GCTGGCGGAGGGATTCTCGGTGCGATGCCTTAGCGAGAAACCGGACGAGA
CAGGTAGTTTTGTCTTCCGCGAGTTTGTTCTGAAGGACAAGCACGAGCAG
CGACACATCCACCACATGCAGTACTTGGCCTGGCCAGATCACTGTGTGCC
CTCCGATCCTAATCTTTTCCTAGAGTTTACGGAGCGGGTGCGTGCCGCTC
GAAACCGCACGCTCCTTCAGGAGATCGAGGAGAGTCTGAAGCAGGTGCGC
CTGATGGATGCCGATGCGGATGCCGACGAGAACGGCGGACTGATGCGCGA
GCGCAAGTGTGCGGCCAGCAACGGAGCCACTCCTGAGGACGAGACGCCGG
TCTCGACAAGCGTGCATCAGTGCATCAGTGCAGCCAATCCACCTGTGATT
GTCCACTGCTCGGCGGGAATAGGACGTACTGGAGTGCTCATACTGATGGA
CACTGCGCTGGCTTTGATGGAGGCTCGAGAACCGGTGTATCCGTTGGACA
TTGTGCGCACCATGCGCGATCAGCGTGCCTGCATGGTGCAGAATGTGAGC
CAGTACCGCTTCGTGTGCGAGTGCATCTGCGCCGCCTACATGAAGATCTC
ACGCAGCAGTGCGGCCATTAACGACGACGAGGATTAGAAGCTTTCTAGAC
CAT
BS25527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpmeg-RK | 2925 | CG1228-PK | 406..2925 | 68..2587 | 12600 | 100 | Plus |
| Ptpmeg-RJ | 2925 | CG1228-PJ | 406..2925 | 68..2587 | 12600 | 100 | Plus |
| Ptpmeg-RI | 2925 | CG1228-PI | 406..2925 | 68..2587 | 12600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpmeg-RK | 4079 | CG1228-RK | 1037..3556 | 68..2587 | 12600 | 100 | Plus |
| Ptpmeg-RJ | 4028 | CG1228-RJ | 986..3505 | 68..2587 | 12600 | 100 | Plus |
| Ptpmeg-RI | 3596 | CG1228-RI | 865..3384 | 68..2587 | 12600 | 100 | Plus |
| Ptpmeg-RK | 4079 | CG1228-RK | 206..256 | 17..67 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 352838..353687 | 159..1008 | 4250 | 100 | Plus |
| 3L | 28110227 | 3L | 353761..354446 | 1009..1694 | 3430 | 100 | Plus |
| 3L | 28110227 | 3L | 354500..355127 | 1695..2322 | 3140 | 100 | Plus |
| 3L | 28110227 | 3L | 355199..355376 | 2320..2497 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 352681..352771 | 68..158 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 355437..355527 | 2497..2587 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 328302..328352 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:24:27 has no hits.
BS25527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-20 17:03:04 Download gff for
BS25527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RB | 65..2635 | 17..2587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:59 Download gff for
BS25527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..3384 | 61..2587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:02 Download gff for
BS25527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..3384 | 61..2587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:02 Download gff for
BS25527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 328302..328352 | 17..67 | 100 | -> | Plus |
| 3L | 352681..352771 | 68..158 | 100 | -> | Plus |
| 3L | 352838..353687 | 159..1008 | 100 | -> | Plus |
| 3L | 353761..354446 | 1009..1694 | 100 | -> | Plus |
| 3L | 354500..355124 | 1695..2319 | 100 | -> | Plus |
| 3L | 355199..355376 | 2320..2497 | 100 | -> | Plus |
| 3L | 355438..355527 | 2498..2587 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:59 Download gff for
BS25527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 328302..328352 | 17..67 | 100 | -> | Plus |
| arm_3L | 352681..352771 | 68..158 | 100 | -> | Plus |
| arm_3L | 352838..353687 | 159..1008 | 100 | -> | Plus |
| arm_3L | 353761..354446 | 1009..1694 | 100 | -> | Plus |
| arm_3L | 354500..355124 | 1695..2319 | 100 | -> | Plus |
| arm_3L | 355199..355376 | 2320..2497 | 100 | -> | Plus |
| arm_3L | 355438..355527 | 2498..2587 | 100 | | Plus |
BS25527.pep Sequence
Translation from 16 to 2586
> BS25527.pep
MPEACCFLHSSFILVMCFYLQIKRNILLGKLPCSSNTQCLLASYTVQSEL
GDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLHRGQLPADAEYNYL
EHAKRLELYGIDLHRATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKM
VKVSFKRKDFFIQLRREPSENYDTLLGFGMSSHKHAKALWKSCVEHHSFF
RLKRPHRLSRFLNISLGSKFYYSGRTELQAVQESKQRGRIHKVFVRSPSK
RLLGAAGGVGTSGSSGGTPMQQHSGSESANSHNNGKPAGAGTILTITKTS
RPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDVGFIEQCTRRFESASPSP
MPPAYSSGQHSPILLPTTIADAVGHQQPESGSDLITIRLQADEQGRYGFN
VKGGVDLSLPVQVSKVVPHTPADRCTPRVCEGDEVLMINGRDVHGLRHEQ
VVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEPLYQYVPESDEIGSHSN
LLDGDALFTQSLLLLSDGLASGALLAQYELMYRKNPDLAITEARKPANAP
KNRYRDISPYDCTRVSLVNSLTGDYINANYVNMEIPGGAVNRYIATQGPL
ASTTTDFWRMVQQESSHLLVMLTTVMESGRQKCHQYWPVTGEELQLAEGF
SVRCLSEKPDETGSFVFREFVLKDKHEQRHIHHMQYLAWPDHCVPSDPNL
FLEFTERVRAARNRTLLQEIEESLKQVRLMDADADADENGGLMRERKCAA
SNGATPEDETPVSTSVHQCISAANPPVIVHCSAGIGRTGVLILMDTALAL
MEAREPVYPLDIVRTMRDQRACMVQNVSQYRFVCECICAAYMKISRSSAA
INDDED*
BS25527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpmeg-PK | 974 | CG1228-PK | 136..974 | 18..856 | 4387 | 100 | Plus |
| Ptpmeg-PJ | 974 | CG1228-PJ | 136..974 | 18..856 | 4387 | 100 | Plus |
| Ptpmeg-PI | 974 | CG1228-PI | 136..974 | 18..856 | 4387 | 100 | Plus |
| Ptpmeg-PH | 974 | CG1228-PH | 136..974 | 18..856 | 4387 | 100 | Plus |
| Ptpmeg-PG | 974 | CG1228-PG | 136..974 | 18..856 | 4387 | 100 | Plus |
