BS25528.complete Sequence
2636 bp assembled on 2011-08-30
GenBank Submission: KX802668
> BS25528.complete
GAAGTTATCAGTCGACATGTCTGGAAGAGGAAATTTGTTGAGCTTATTTA
ATAAAAATGCTGGCAATATGGGAAAATCAATTTCAAGTAAAGATCATGAA
ATCGACAGTGGCTTGGATTTTAACAACTCTGAATCAAGTGGAGAACGTTT
ACTGTCAAGCCATAATATTGAAACTGATCTTATAACCACTCTTCAACATG
TAAACATCTCGGTCGGCCGAGGACGTGCTAGGCTTATAGACACATTAAAA
ACAGATGACCATACATCAAATCAATTTATAACATCTGAATCAAAGGAAAA
CATTACCAAAAAGACAAAGGGCCCCGAATCGGAAGCAATTGCTTCAGAAA
ATGGATTATTTTTTCCCGATTTAATTTACGGATCTAAAGGTTCATCTGTT
AATATATATTGTAATTACTTAAAGCTAACGACGGATGAATCCAAGGGAGT
TTTTAATTACGAAGTGCGTTTTTTTCCTCCCATTGACTCTGTTCATTTAA
GAATAAAATATTTAAATGATCATAAGGATAAACTCGGTGGAACCAAGACA
TTTGACGGAAATACTTTATATTTACCTATTTTGTTACCAAATAAGATGAC
CGTCTTTATTTCAAAGGCGGAAGATGTTGAGTTGCAGATTCGCATTTTAT
ACAAAAAAAAAGAGGAAATGAGGAACTGCACGCAATTATATAATATTTTA
TTCGATAGAGTTATGAAAGTATTGAATTACGTAAAATTTGATCGCAAGCA
GTTTGATCCTTCGCGTCCAAAAATAATACCACTGGCAAAGTTAGAAGTTT
GGCCTGGCTATGTTACAGCCGTTGACGAATACAAAGGTGGTTTAATGCTA
TGCTGCGACGTTTCGCATCGTATACTTTGCCAAAAAACTGTTCTAGAAAT
GCTGGTTGATCTTTATCAGCAAAATGTAGAGCATTACCAAGAATCAGCAA
GAAAAATGTTGGTTGGAAATATTGTCTTAACTAGGTATAACAATCGTACA
TATAAAATAAATGACATTTGTTTTGATCAAAATCCAACATGTCAGTTTGA
AATTAAAACTGGCTGCACAAGTTACGTGGAGTATTACAAACAATATCACA
ATATAAACATAAAGGACGTTAATCAACCATTGATTTACAGTATAAAGAAA
TCAAGAGGAATTCCAGCAGAAAGGGAAAATTTACAGTTTTGTTTAATTCC
AGAATTGTGTTATCTTACTGGGCTGCGAGACGAAGTACGGTCAGATAACA
AGCTTATGCGCGAGATTGCTACATTTACAAGAGTTTCGCCAAATCAACGA
CAGATGGCGTTAAATAAATTTTACGAAAATGTTTCAAATACACCCGCCGC
ACAAGAAATTCTAAATAGCTGGGGTCTTTCATTAACGAATAATTCCAACA
AGATAAGTGGGCGTCAAATGGACATAGAGCAAATATATTTTTCAAAAATT
AGTGTATCGGCCGGAAGGTCCGCAGAGTTCTCCAAACATGCTGTGACCAA
TGAAATGTTGAAAGTAGTCCACCTGAGTAAATGGATCATTATACATTTAA
GAAATTATAGACAAGCTGCAACTAGCTTGCTCGATAACATGAAACAGGCT
TGTGAGTCACTTGGTATGAACATTTCTAACCCAACAATGATTTCGTTAGA
TCATGACCGAATCGATGCCTACATTCAAGCACTGCGGCGAAATATAACTA
TGAATACGCAAATGGTCGTATGTATTTGTCATAACAGAAGAGATGATCGT
TATGCTGCAATAAAAAAAATATGTTGCTCGGAAATACCTATACCATCACA
GGTTATAAATGCTAAAACTTTACAAAATGATCTTAAAATTCGATCCGTTG
TTCAAAAAATTGTTCTACAAATGAACTGTAAACTCGGAGGCTCATTATGG
ACGGTAAAAATTCCATTTAAAAATGTAATGATTTGCGGAATAGACTCATA
TCATGACCCATCTAATCGGGGGAATTCTGTTGCTGCATTTGTGGCCTCCA
TAAATTCGTCGTATTCACAGTGGTACAGTAAAGCTGTTGTACAAACAAAA
CGTGAAGAAATTGTTAATGGGCTCTCTGCATCTTTTGAAATTGCATTAAA
AATGTATCGTAAAAGGAATGGCAAACTCCCCACAAATATTATAATATACA
GAGATGGAATTGGAGATGGACAGCTTTATACATGTCTTAATTATGAAATT
CCACAATTTGAAATGGTGTGTGGAAATCGCATAAAAATTTCATATATTGT
AGTCCAAAAACGAATTAACACTCGCATCTTCTCGGGTAGCGGCATTCATC
TAGAAAACCCATTGCCAGGAACTGTCGTAGATCAACATATAACAAAATCA
AATATGTATGATTTTTTTTTGGTTTCGCAATTGGTACGACAGGGTACTGT
AACCCCAACTCATTATGTTGTTCTTCGAGATGACTGCAATTATGGACCCG
ACATAATTCAAAAACTAAGTTACAAACTTTGTTTTTTATATTACAATTGG
GCTGGTACAGTACGAATTCCAGCTTGTTGTATGTACGCTCACAAATTGGC
TTATTTGATTGGACAAAGTATTCAACGAGATGTGGCTGAAGCACTTTCTG
AAAAACTATTTTATCTTTAAAAGCTTTCTAGACCAT
BS25528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO3-RF | 2604 | CG40300-PF | 1..2604 | 17..2620 | 13020 | 100 | Plus |
| AGO3-RE | 2604 | CG40300-PE | 1..2604 | 17..2620 | 13020 | 100 | Plus |
| AGO3-RD | 2604 | CG40300-PD | 1..2604 | 17..2620 | 13020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO3-RF | 2773 | CG40300-RF | 100..2706 | 16..2622 | 13035 | 100 | Plus |
| AGO3-RE | 2974 | CG40300-RE | 301..2907 | 16..2622 | 13035 | 100 | Plus |
| AGO3-RD | 2800 | CG40300-RD | 127..2733 | 16..2622 | 13035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23568545..23569960 | 388..1803 | 7080 | 100 | Plus |
| 3L | 28110227 | 3L | 23566841..23567216 | 16..391 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 23626536..23626903 | 391..16 | 1725 | 97.9 | Minus |
| 3L | 28110227 | 3L | 23649123..23649372 | 2284..2533 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 23583178..23583364 | 1799..1985 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 23618468..23618639 | 1980..2151 | 845 | 99.4 | Plus |
| 3L | 28110227 | 3L | 23634248..23634383 | 2150..2285 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 23689484..23689573 | 2533..2622 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:07:45 has no hits.
BS25528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:36 Download gff for
BS25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RF | 79..2680 | 17..2618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:46 Download gff for
BS25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RD | 128..2729 | 17..2618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:09 Download gff for
BS25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RD | 128..2729 | 17..2618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:09 Download gff for
BS25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23649124..23649372 | 2285..2533 | 100 | -> | Plus |
| 3L | 23689485..23689569 | 2534..2618 | 100 | | Plus |
| 3L | 23566842..23567214 | 17..389 | 100 | -> | Plus |
| 3L | 23568547..23569958 | 390..1801 | 100 | -> | Plus |
| 3L | 23583181..23583364 | 1802..1985 | 100 | -> | Plus |
| 3L | 23618474..23618639 | 1986..2151 | 100 | -> | Plus |
| 3L | 23634250..23634382 | 2152..2284 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:46 Download gff for
BS25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23559942..23560314 | 17..389 | 100 | -> | Plus |
| arm_3L | 23561647..23563058 | 390..1801 | 100 | -> | Plus |
| arm_3L | 23576281..23576464 | 1802..1985 | 100 | -> | Plus |
| arm_3L | 23611574..23611739 | 1986..2151 | 100 | -> | Plus |
| arm_3L | 23627350..23627482 | 2152..2284 | 100 | -> | Plus |
| arm_3L | 23642224..23642472 | 2285..2533 | 100 | -> | Plus |
| arm_3L | 23682585..23682669 | 2534..2618 | 100 | | Plus |
BS25528.pep Sequence
Translation from 16 to 2619
> BS25528.pep
MSGRGNLLSLFNKNAGNMGKSISSKDHEIDSGLDFNNSESSGERLLSSHN
IETDLITTLQHVNISVGRGRARLIDTLKTDDHTSNQFITSESKENITKKT
KGPESEAIASENGLFFPDLIYGSKGSSVNIYCNYLKLTTDESKGVFNYEV
RFFPPIDSVHLRIKYLNDHKDKLGGTKTFDGNTLYLPILLPNKMTVFISK
AEDVELQIRILYKKKEEMRNCTQLYNILFDRVMKVLNYVKFDRKQFDPSR
PKIIPLAKLEVWPGYVTAVDEYKGGLMLCCDVSHRILCQKTVLEMLVDLY
QQNVEHYQESARKMLVGNIVLTRYNNRTYKINDICFDQNPTCQFEIKTGC
TSYVEYYKQYHNINIKDVNQPLIYSIKKSRGIPAERENLQFCLIPELCYL
TGLRDEVRSDNKLMREIATFTRVSPNQRQMALNKFYENVSNTPAAQEILN
SWGLSLTNNSNKISGRQMDIEQIYFSKISVSAGRSAEFSKHAVTNEMLKV
VHLSKWIIIHLRNYRQAATSLLDNMKQACESLGMNISNPTMISLDHDRID
AYIQALRRNITMNTQMVVCICHNRRDDRYAAIKKICCSEIPIPSQVINAK
TLQNDLKIRSVVQKIVLQMNCKLGGSLWTVKIPFKNVMICGIDSYHDPSN
RGNSVAAFVASINSSYSQWYSKAVVQTKREEIVNGLSASFEIALKMYRKR
NGKLPTNIIIYRDGIGDGQLYTCLNYEIPQFEMVCGNRIKISYIVVQKRI
NTRIFSGSGIHLENPLPGTVVDQHITKSNMYDFFLVSQLVRQGTVTPTHY
VVLRDDCNYGPDIIQKLSYKLCFLYYNWAGTVRIPACCMYAHKLAYLIGQ
SIQRDVAEALSEKLFYL*
BS25528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO3-PF | 867 | CG40300-PF | 1..867 | 1..867 | 4530 | 100 | Plus |
| AGO3-PE | 867 | CG40300-PE | 1..867 | 1..867 | 4530 | 100 | Plus |
| AGO3-PD | 867 | CG40300-PD | 1..867 | 1..867 | 4530 | 100 | Plus |
| AGO3-PG | 866 | CG40300-PG | 1..842 | 1..842 | 4400 | 99.8 | Plus |
| aub-PC | 795 | CG6137-PC | 34..795 | 122..867 | 1155 | 32.5 | Plus |
