BS25532.complete Sequence
3212 bp assembled on 2011-08-23
GenBank Submission: KX804178
> BS25532.complete
GAAGTTATCAGTCGACATGACCAATTCGATTGCGTCAACGAAATGCCTGC
CCAATGCACTATCGACCGGCAATTATGGAATGTCCCAGAGCCACCGTTAC
ACCGATGATAGCAAGGAGTACATCATCGTCAAGCTTACCGATTCTGCCTT
CCGTGCGATCGAGGAATATCAGCGCGATGACAACGCTAAACGCCTGCAAC
CAGGCCAAAGGGCCAAAATCCAATTTGTGGGCAACACGGGTGTCATACAG
TTCCCGCGACCAGCGACGGATGCTAATGGCATCCCTAATGCTAATGGCAA
TGGCAGCGACGCGACTGGAGCAGGAGGAGGAGGTGGTAGAAAATTTGGCT
TCACTATCAACAATATGGAGGGAACGCTTGAATGCGTTCAGCAGCAGCAA
CGGAGCCTCGGAGTCCTCGGAGCGGTCACCCTGCGAATGCGGATTCATGC
CAATGAAGATGTCTACGATTCGACACGCACAAAAATGGCCATTGCCGAGG
AGACGGAGAAGAGCAAGTGCATCAGGGAAATCAAGCCGAATCAGTCGGAT
ATCGGGCGTAAGGTGAAGAAGCCGCCATCAGCAATCCAATCTTCTGCCTC
AACCGCCTCAGCCTTCTCCTCCAACTCCTCTAACTCCGGTTTGACGACGA
CGGCATTTCATCATCACAGCAACAGCAACAACAGTGGGAACAACAACAAC
AGGAGCAGCAGCAGCAGCAATAGTTTTAATAGCAACAACCATAGTCGTAA
GTTAGGTTCATCGCCATTTAATGGCCTAGGCGTAGGATCCAGCAGCTCCT
CCAGCGCGTTTGCCTCGCGCTCGCCCAATCCCAGCACGCTGGGCGCTATC
GGCACAGTCAATGGCTCTGGCGTTGTTGGTGGTCGCTATGGTGGCGGTGC
AGCCTCCTCGCTAGCTTCCACATTCGCCAACGGCATCTCACAGGGCTACC
ACAACCTGAGCGGCAGCTCGCCAAGAGACTCGATGACAGCGGGAACATCA
AGTGCGACTGCCTCATCAGTCATCTCCTCACGCAACAAGATGCCAAGCGG
AGGCCTTACCTCCTCCAACTCCAACTCCTCATCGTCCTCCAGGAGTGCCA
ATAGCAAGTCTTCGGGCGGCAACAAGATGTCCGATGTGTCCAGGCGCAAT
ATACGCGAACGGCTTATCCATCTGCTGGCCCTCAAGGCCTTCAAGAAGCC
TGAGCTCTTTGCGCGCCTGAAGAACGAAGGCATTCGGGATCGGGAGCGTA
ACCAGATCACCAACATACTCATGGACATTAGCACCATGTCGCACAACACG
TACAATCTGCGTCGCCAGATGTGGAACGATGTGGACGAGAACTGGCCCTT
TTTCAGCGAACAGGAGGTTCAGCAGCTGAAGCGACGCAAGCCTCAAAATC
TGACACCGCCAATGAGTTCGGACGCGGGCAGTTCGACGTCCGGCCAGAGT
CCAACATCGACGCACACGGGCAGTCCGCCGCCGCCTTCAAGTAATGGTGG
TCCCGGTGGAGTTGGAAGTGGAGCAGGCGGTACGAGCATGAAGCGGACCA
GCCTCGAGTACGACGAGACCATGTTCAGCACTGTTCAGCCCAAGAAGCAG
CGCATCAGTCACTACAAGAAGGACACTCCGCCCTCGGGAACGTCGTACTC
TTCCGCTGGGGTATCGATGTCACTGGGTTCATCTGGATCATCCAGTCGGA
GTCGGTATACGCCGCCGCAACGCCAGCCTGGTCCATTGGATGATCACAGC
ACAACTGACCTTAGCTACAATGTGCTGGACAACATAGTAGAGTTTATGAG
CTCCACGGCAGCGGCGACGCAGCAATCGATGGAACAGCAGCAGCATCCGA
GAAGCAACAGTAGTAATAACAGACGTGGAAGCTCCTCGTTGGCGGGCACC
AGCAATGGGGGCAACAACAAGGATAAGCGGAACTCTACGGGCAGCAATTC
AAGCAGCTCCAGTGGCTATGAGACGCAACAGGATCGCCAGCGTTCAACAA
CGCCGATGTCGTCAAACCGCAGCAGCGCATCCTCTTCAACGACGCCGCCG
AAGCTTGCGGCCAGTTTTGTGCCCGCGGCCACCTCTGGATCCGCTTCCGG
TACCAGCAAACAACGTATGCCGCCCCAGCAAAGCGACTACAACTCGTACA
ACAGCAATAACGCTCAACATGTGGCGTCCAACAGCAAAAAAAGGATGGGT
AGTGTTGGTCCTAGTGGTGGATCGAATGGCCAGCGTCAAAGAAGTGCCAG
TGGCTCTAATTCTGGCTATCAACAGGTGCCGCCACCCTCGTCCAACTCGC
GGTCGTCTATCCAGCAGCAGAATCAGCACCAGAAGCAGCAGGTGCAACAG
AAGCAGGCGCCGTCGCAGCAGCAGCAGCAGCAGCAACAGCAATACCATCA
GCAAGCCAAGCATCCATCGCCATCGCAGCAGTTGGCTGCTGCTGCCCATG
CCTATGCCCATGCCACCGCGGATACGGACTCATCCGCCACGCCGCGCTAC
GACTTCAGCCAATACGTGCCCATCCAGACCCTGGAGGTGCGGCGCCGTTA
CAAGACTGAGTTCGAAAGCGACTACGATGAGTACCGCAAGCTGCTGACGC
GCGTCGAGGATGTGCGCAATCGTTTCCAGGACTTATCCGAACGTCTGGAG
AGCGCCAGGCGCTGTGACAACGGATACGGGGACTACGATCACATCAAGCG
GCAGATTGTGTGCGAATACGAGCGGATCAATAACGATCGCACCATTGGAG
AGGACAAGGAGCGTTTTGATTACCTGCACGCCAAGCTGGCGCACATCAAG
CAGCTGGTGATGGACTATGACAAGACTTTGATGAGTGCCACGATGGCGAT
GGCGCCCACGGACGTCGTTGCTGCTCAAGGGCCCGATCCAGCTGTGGCTA
AGGCGGCGGCCAGGTTAGCCGAACATCATCGTCGGCAACATCACGCCGCA
GAGACGATAAAACAACAGCAGCAGCAAAAGCAGACACATCAGCATCATTT
GCAGCGTCATTTGCAGCATCATTTGCAGCAGCAACAAAATCTACTGCAGC
AGCAACAAAATCTACTGCAGCAGCAGAGTGTGAGTAATTCGGATGACAGT
TCGGATAGCTCGGATTCCAATGATGACGACGACGACGACGATGAGGACTG
CGATGATTCCAACTCTAATACCGATGACGATGAGGCACGCTACTGAAAGC
TTTCTAGACCAT
BS25532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(Tpl)-RC | 3180 | CG32217-PC | 1..3180 | 17..3196 | 15900 | 100 | Plus |
| Su(Tpl)-RB | 3180 | CG32217-PB | 1..3180 | 17..3196 | 15900 | 100 | Plus |
| Su(Tpl)-RA | 3180 | CG32217-PA | 1..3180 | 17..3196 | 15900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(Tpl)-RC | 6621 | CG32217-RC | 1038..4217 | 17..3196 | 15900 | 100 | Plus |
| Su(Tpl)-RB | 6572 | CG32217-RB | 989..4168 | 17..3196 | 15900 | 100 | Plus |
| Su(Tpl)-RA | 4292 | CG32217-RA | 994..4173 | 17..3196 | 15900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19891524..19894703 | 3196..17 | 15900 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2964 | 1799..1991 | 188 | 61 | Plus |
BS25532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:43 Download gff for
BS25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(Tpl)-RB | 979..4157 | 17..3195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:02 Download gff for
BS25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(Tpl)-RA | 994..4172 | 17..3195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:50 Download gff for
BS25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(Tpl)-RA | 994..4172 | 17..3195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:50 Download gff for
BS25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19891525..19894703 | 17..3195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:02 Download gff for
BS25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19884625..19887803 | 17..3195 | 100 | | Minus |
BS25532.pep Sequence
Translation from 16 to 3195
> BS25532.pep
MTNSIASTKCLPNALSTGNYGMSQSHRYTDDSKEYIIVKLTDSAFRAIEE
YQRDDNAKRLQPGQRAKIQFVGNTGVIQFPRPATDANGIPNANGNGSDAT
GAGGGGGRKFGFTINNMEGTLECVQQQQRSLGVLGAVTLRMRIHANEDVY
DSTRTKMAIAEETEKSKCIREIKPNQSDIGRKVKKPPSAIQSSASTASAF
SSNSSNSGLTTTAFHHHSNSNNSGNNNNRSSSSSNSFNSNNHSRKLGSSP
FNGLGVGSSSSSSAFASRSPNPSTLGAIGTVNGSGVVGGRYGGGAASSLA
STFANGISQGYHNLSGSSPRDSMTAGTSSATASSVISSRNKMPSGGLTSS
NSNSSSSSRSANSKSSGGNKMSDVSRRNIRERLIHLLALKAFKKPELFAR
LKNEGIRDRERNQITNILMDISTMSHNTYNLRRQMWNDVDENWPFFSEQE
VQQLKRRKPQNLTPPMSSDAGSSTSGQSPTSTHTGSPPPPSSNGGPGGVG
SGAGGTSMKRTSLEYDETMFSTVQPKKQRISHYKKDTPPSGTSYSSAGVS
MSLGSSGSSSRSRYTPPQRQPGPLDDHSTTDLSYNVLDNIVEFMSSTAAA
TQQSMEQQQHPRSNSSNNRRGSSSLAGTSNGGNNKDKRNSTGSNSSSSSG
YETQQDRQRSTTPMSSNRSSASSSTTPPKLAASFVPAATSGSASGTSKQR
MPPQQSDYNSYNSNNAQHVASNSKKRMGSVGPSGGSNGQRQRSASGSNSG
YQQVPPPSSNSRSSIQQQNQHQKQQVQQKQAPSQQQQQQQQQYHQQAKHP
SPSQQLAAAAHAYAHATADTDSSATPRYDFSQYVPIQTLEVRRRYKTEFE
SDYDEYRKLLTRVEDVRNRFQDLSERLESARRCDNGYGDYDHIKRQIVCE
YERINNDRTIGEDKERFDYLHAKLAHIKQLVMDYDKTLMSATMAMAPTDV
VAAQGPDPAVAKAAARLAEHHRRQHHAAETIKQQQQQKQTHQHHLQRHLQ
HHLQQQQNLLQQQQNLLQQQSVSNSDDSSDSSDSNDDDDDDDEDCDDSNS
NTDDDEARY*
BS25532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(Tpl)-PC | 1059 | CG32217-PC | 1..1059 | 1..1059 | 5453 | 100 | Plus |
| Su(Tpl)-PB | 1059 | CG32217-PB | 1..1059 | 1..1059 | 5453 | 100 | Plus |
| Su(Tpl)-PA | 1059 | CG32217-PA | 1..1059 | 1..1059 | 5453 | 100 | Plus |
| Samuel-PE | 846 | CG31868-PE | 140..696 | 180..737 | 239 | 23.4 | Plus |
| Samuel-PD | 846 | CG31868-PD | 140..696 | 180..737 | 239 | 23.4 | Plus |
| Samuel-PE | 846 | CG31868-PE | 77..539 | 275..761 | 181 | 23.4 | Plus |
