BS25537.complete Sequence
5102 bp assembled on 2011-09-21
GenBank Submission: KX802056
> BS25537.complete
GAAGTTATCAGTCGACATGAGTGATGATACGAGCGCTTCGGGCGGGACAA
GTGCCCCTTTTCCATCGCCAGTTACTGCGGACCCGGAACCAGGAGCCACT
GCCTCCAAATTACCGGGTCCCATCAGATCCAATATTCCCACGCCCGCTAC
TTCTGGTACCGGAATCCCGCAGCCCAGCAAAATGAAGGCACCATCTAGTT
TTGGATCGACGGGTTCTGTTTCCAAAATCGGAAGACCGTGCTGCAATCAC
ACAACTCCCAAATCCGGTCCACCACCAAGAGAAGCCACCAGCATGAGTCG
TGAAAGCGATGACAATTTAAGTTCGATCAATTCGGCTTATACAGATAACA
GCAGCGCCGTGCTGACAGCAAACACAGAGCAGTTCATCATTGGACAGCGG
GTTTGGCTGGGTGGCACTCGTCCCGGACAGATTGCCTTCATTGGAGACAC
ACACTTTGCTGCTGGCGAATGGGCGGGTGTTGTCCTTGACGAGCCTAATG
GTAAAAACGATGGCTGTGTGTCGGGCAAAAGGTACTTCCAGTGCGAGCCG
AAACGAGGCATTTTCTCACGCCTCACACGTCTTACCACATATCCCTTGGC
CGGAGCCCAGACTCCGACCTCTCCATTGGCCAAAAGCTCCCCAGACAGAT
CGCGCACAGTTTCTCCAACTGCGAGTATTCGCAGCTCTATGCTTCGCAGT
CCCGGCATTGGAGGCAAGAATGGAATGGCTGTGGGCGATCGTGTGATTGT
CTCTTCTGGATTTGGTAGTCGTCCTGGTATCTTACGCTATTTGGGAGAGA
CACAGTTTGCTCCCGGCAACTGGTGCGGTGTGGAATTGGATGAGCCTAGC
GGCAAAAACGATGGAACTGTCGATGATATCAGATACTTTGAGTGCAAGCC
CAAGTACGGGGTGTTTGTACCTATTGCGAAGGTTTCACTGTCGCCGTCGT
CCAAGAAAACGCGTCTTTCCAGGACCGGATCAAGGGAGTCGCTCACCTCG
ATTGGCACCATGAACAGCATCGCCACCACGGCCACGTCGCGCATGCGCAT
GAATGCTCAGCGCAAGTCGAGCACGCCCGTTAAGCCAATTTTAGCGACGC
CGAAAAGCCAATTTTCCATGCAGGATCTGCTGCGCGAGAAGCAACAACAT
GTGGAGAAGCTGATGGTGGAGCGCGACCTGGACCGCGAGGATGCCCAGAA
CCAGGCGCTGCAGCTGCAGAAGAACATCAACGAGCTAAAAGCAAGAATCG
TTGAATTGGAGTCGGCATTGGACAATGAACGAAAGAAAACTGAAGAATTG
CAGTGCTCCATAGACGAAGCCCAGTTTTGTGGCGATGAATTGAATGCTCA
GTCACAGGTTTACAAGGAAAAAATCCATGATCTGGAGTCAAAAATCACAA
AACTGGTGTCCGCCACGCCAAGCCTACAAAGTATACTACCGCCCGATCTA
CCTTCAGACGATGGTGCTTTGCAGGAGGAAATCGCCAAGCTGCAGGAAAA
GATGACCATTCAGCAGAAGGAGGTTGAATCTCGGATTGCGGAACAGCTGG
AGGAGGAGCAGCGGTTGAGGGAAAATGTAAAGTACCTTAATGAGCAAATC
GCCACTCTACAGTCCGAGTTGGTGTCCAAAGATGAGGCCCTGGAGAAATT
CTCCCTCTCGGAATGTGGCATCGAGAATCTCCGAAGGGAACTCGAACTTC
TCAAGGAGGAGAACGAAAAGCAAGCTCAGGAGGCTCAGGCTGAGTTCACC
CGAAAACTAGCCGAAAAATCCGTAGAGGTGTTAAGATTAAGCTCTGAATT
GCAAAACTTGAAGGCAACATCCGATTCCCTGGAAAGCGAAAGGGTTAACA
AAACCGACGAATGTGAAATTCTTCAAACCGAAGTACGAATGCGGGATGAG
CAAATCAGAGAGCTAAACCAACAACTCGATGAGGTTACCACACAACTAAA
TGTACAAAAAGCGGATAGTTCTGCTCTGGATGATATGCTTCGATTGCAAA
AGGAGGGTACTGAAGAAAAATCTACTCTTTTAGAGAAAACCGAAAAGGAG
CTAGTTCAAAGCAAAGAACAAGCTGCGAAAACTCTAAATGATAAGGAACA
ACTTGAAAAACAGATATCAGATTTAAAGCAATTGGCGGAACAAGAAAAAC
TAGTCAGGGAAATGACTGAAAATGCAATCAATCAAATACAACTAGAAAAA
GAATCCATAGAACAGCAATTGGCTTTAAAACAAAACGAACTTGAGGACTT
CCAAAAGAAACAGTCAGAATCGGAAGTTCATCTTCAGGAAATCAAAGCTC
AGAACACGCAGAAGGATTTTGAATTAGTTGAATCTGGTGAGTCCCTTAAA
AAACTGCAACAGCAATTGGAGCAGAAAACTTTGGGTCATGAAAAACTGCA
AGCTGCTTTGGAAGAACTAAAGAAAGAAAAGGAAACGATCATAAAGGAAA
AGGAGCAGGAGCTCCAGCAGCTCCAAAGCAAGTCAGCTGAATCCGAAAGT
GCTTTAAAAGTCGTACAAGTACAACTAGAGCAACTCCAGCAACAGGCTGC
CGCATCTGGAGAAGAGGGATCCAAAACTGTGGCCAAATTGCACGATGAGA
TTAGTCAGCTTAAGTCCCAAGCTGAAGAAACTCAGTCCGAGTTAAAATCC
ACCCAATCCAACTTGGAAGCCAAAAGCAAACAATTGGAGGCAGCAAATGG
CAGCCTAGAAGAGGAAGCCAAGAAGTCAGGCCATCTGCTGGAACAGATTA
CCAAACTTAAATCTGAAGTAGGGGAGACGCAGGCAGCTCTCAGTTCATGT
CATACGGATGTGGAATCCAAAACTAAGCAACTTGAAGCCGCAAATGCAGC
TCTGGAGAAGGTCAACAAGGAATACGCGGAATCCCGAGCGGAGGCTTCTG
ATCTGCAAGATAAGGTGAAGGAGATCACCGATACGCTACATGCTGAGCTT
CAAGCTGAACGATCGTCCTCCAGTGCTCTCCATACTAAGCTGTCCAAGTT
CTCGGATGAAATAGCTACCGGCCACAAGGAACTGACCAGCAAAGCCGATG
CCTGGAGCCAGGAGATGCTGCAAAAAGAGAAGGAACTACAGGAGCTGCGA
CAGCAACTTCAAGATAGTCAAGACTCTCAAACAAAGCTGAAAGCAGAGGG
AGAGCGGAAAGAAAAGTCTTTCGAGGAATCTATAAAGAATCTTCAGGAAG
AAGTCACTAAGGCCAAGACGGAGAATCTAGAGCTAAGCACTGGCACACAG
ACGACCATAAAGGACCTGCAGGAGCGACTGGAAATCACCAATGCTGAGCT
CCAGCACAAGGAAAAAATGGCAAGCGAAGATGCGCAGAAGATTGCCGACC
TTAAGACCCTTGTGGAAGCCATCCAGGTGGCTAATGCCAATATATCAGCT
ACAAATGCGGAGCTCTCCACTGTATTGGAAGTTCTTCAGGCGGAGAAGAG
TGAAACAAATCACATATTCGAGCTCTTTGAAATGGAAGCCGATATGAACT
CAGAGCGGTTGATCGAAAAAGTTACTGGGATTAAGGAGGAACTAAAGGAA
ACCCATCTGCAACTGGATGAGCGACAGAAAAAGTTCGAGGAGTTGGAGGA
GAAATTGAAGCAAGCTCAGCAAAGTGAACAAAAGTTGCAACAGGAGTCTC
AGACTTCCAAGGAGAAACTTACGGAAATACAACAATCCTTGCAAGAACTC
CAAGATTCTGTAAAGCAAAAGGAAGAACTTGTCCAGAACTTGGAAGAAAA
GGTTAGGGAAAGCAGTTCCATCATAGAAGCGCAGAACACGAAACTAAATG
AAAGCAATGTTCAGTTGGAAAACAAAACTTCTTGTTTAAAGGAAACCCAA
GATCAATTGCTAGAGTCACAGAAGAAGGAGAAACAATTGCAGGAAGAGGC
TGCCAAACTTTCCGGTGAGCTGCAGCAAGTGCAAGAGGCCAATGGAGACA
TAAAGGATTCCCTAGTAAAAGTAGAGGAACTAGTAAAGGTGTTGGAGGAA
AAACTCCAAGCAGCCACCTCCCAGTTGGATGCCCAACAAGCCACAAATAA
GGAACTCCAGGAGTTGCTGGTTAAATCTCAAGAAAACGAGGGAAATCTGC
AAGGAGAATCTTTGGCAGTCACTGAGAAACTACAACAACTGGAGCAAGCA
AATGGGGAGCTTAAGGAGGCTCTGTGTCAAAAAGAGAATGGCCTTAAAGA
ACTTCAGGGCAAACTTGATGAAAGTAATACTGTATTAGAAAGTCAAAAGA
AGAGCCACAACGAAATTCAGGATAAGTTAGAACAGGCCCAGCAAAAGGAG
AGGACTCTTCAAGAGGAAACATCCAAGTTGGCGGAGCAACTGAGCCAATT
AAAGCAGGCTAATGAAGAGCTCCAGAAATCCCTTCAGCAAAAGCAGTTAC
TTTTGGAAAAGGGTAATGAATTCGACACCCAGCTGGCAGAATATCAGAAA
GTCATTGATGAGATGGATGATGCGGCTTCCGTTAAATCCGCGCTGCTGGA
ACAGCTACAAAATAGAGTTGCGGAACTGGAGACCGCACTCCGTCAAGCCA
ACGATGCCCAAAAGACTGCTTATCTGGAGACTAAGGAACTGAGGCGCCAG
CTGGAATCGCTGGAACTGGAGAAGTCGAGGGAGGTTCTGAGCCTAAAGGC
TCAGATGAATGGTGCGAGCAGTAGGTCCGGAAAGGGTGATGAAGTGGAGT
CACTGGACATCGAAACCAGTCTTGCCAAGATTAACTTCCTGAACTCAATT
ATTGCTGACATGCAGCAGAAGAATGATGCACTCAAGGCAAAGGTGCAGAC
CCTTGAAACCTTGCCAATGGATTTCACCAAACCTCATGCCTTCGATGCCC
TGACAAAGCGGAAACCGGCTCCCAGACTTTTCTGCGACATCTGCGATGAG
TTTGATCAGCACGATACGGAGGATTGTCCAATCCAGGGAAGCGAAGATCA
AGACTACTCCACACCGTCATCCGAGTCCAACAACAACGAGAAGGAGCGGA
AGCTGCCGGCACCCAGGAAATACTGTGATTCCTGCGAGGTTTTTGGCCAC
GATACGAGCGAATGTGCCGATGATGAAACCTATTAGAAGCTTTCTAGACC
AT
BS25537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CLIP-190-RB | 5070 | CG5020-PB | 1..5070 | 17..5086 | 25350 | 100 | Plus |
| CLIP-190-RA | 5073 | CG5020-PA | 1..5073 | 17..5086 | 25285 | 99.9 | Plus |
| CLIP-190-RP | 4872 | CG5020-PP | 64..4872 | 281..5086 | 23965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CLIP-190-RB | 5625 | CG5020-RB | 263..5332 | 17..5086 | 25350 | 100 | Plus |
| CLIP-190-RA | 5917 | CG5020-RA | 552..5624 | 17..5086 | 25285 | 99.9 | Plus |
| CLIP-190-RN | 5291 | CG5020-RQ | 185..4998 | 276..5086 | 23975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17406994..17408825 | 2868..4699 | 9160 | 100 | Plus |
| 2L | 23513712 | 2L | 17405484..17406942 | 1412..2870 | 7295 | 100 | Plus |
| 2L | 23513712 | 2L | 17385631..17385895 | 17..281 | 1325 | 100 | Plus |
| 2L | 23513712 | 2L | 17400611..17400827 | 500..716 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 17409091..17409299 | 4831..5039 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 17401110..17401290 | 880..1060 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 17400893..17401058 | 717..882 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 17400392..17400555 | 341..504 | 820 | 100 | Plus |
| 2L | 23513712 | 2L | 17408891..17409023 | 4698..4830 | 665 | 100 | Plus |
| 2L | 23513712 | 2L | 17402373..17402489 | 1122..1238 | 570 | 99.1 | Plus |
| 2L | 23513712 | 2L | 17404728..17404841 | 1233..1346 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 17401516..17401582 | 1058..1124 | 335 | 100 | Plus |
| 2L | 23513712 | 2L | 17405356..17405422 | 1346..1412 | 335 | 100 | Plus |
| 2L | 23513712 | 2L | 17394428..17394496 | 280..348 | 330 | 98.6 | Plus |
| 2L | 23513712 | 2L | 17409358..17409405 | 5039..5086 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:20 has no hits.
BS25537.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 16:36:39 Download gff for
BS25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLIP-190-RM | 634..5703 | 17..5086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:23 Download gff for
BS25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLIP-190-RB | 263..5332 | 17..5086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:27 Download gff for
BS25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLIP-190-RB | 263..5332 | 17..5086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:27 Download gff for
BS25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17405356..17405422 | 1346..1412 | 100 | -> | Plus |
| 2L | 17385631..17385895 | 17..281 | 100 | -> | Plus |
| 2L | 17394430..17394492 | 282..344 | 100 | -> | Plus |
| 2L | 17400396..17400551 | 345..500 | 100 | -> | Plus |
| 2L | 17400612..17400827 | 501..716 | 100 | -> | Plus |
| 2L | 17400893..17401058 | 717..882 | 100 | -> | Plus |
| 2L | 17401113..17401290 | 883..1060 | 100 | -> | Plus |
| 2L | 17401519..17401581 | 1061..1123 | 100 | -> | Plus |
| 2L | 17402375..17402485 | 1124..1234 | 100 | -> | Plus |
| 2L | 17404730..17404840 | 1235..1345 | 100 | -> | Plus |
| 2L | 17405485..17406941 | 1413..2869 | 100 | -> | Plus |
| 2L | 17406996..17408825 | 2870..4699 | 100 | -> | Plus |
| 2L | 17408893..17409023 | 4700..4830 | 100 | -> | Plus |
| 2L | 17409091..17409299 | 4831..5039 | 100 | -> | Plus |
| 2L | 17409359..17409405 | 5040..5086 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:23 Download gff for
BS25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17385631..17385895 | 17..281 | 100 | -> | Plus |
| arm_2L | 17394430..17394492 | 282..344 | 100 | -> | Plus |
| arm_2L | 17400396..17400551 | 345..500 | 100 | -> | Plus |
| arm_2L | 17400612..17400827 | 501..716 | 100 | -> | Plus |
| arm_2L | 17400893..17401058 | 717..882 | 100 | -> | Plus |
| arm_2L | 17401113..17401290 | 883..1060 | 100 | -> | Plus |
| arm_2L | 17401519..17401581 | 1061..1123 | 100 | -> | Plus |
| arm_2L | 17402375..17402485 | 1124..1234 | 100 | -> | Plus |
| arm_2L | 17404730..17404840 | 1235..1345 | 100 | -> | Plus |
| arm_2L | 17405356..17405422 | 1346..1412 | 100 | -> | Plus |
| arm_2L | 17405485..17406941 | 1413..2869 | 100 | -> | Plus |
| arm_2L | 17406996..17408825 | 2870..4699 | 100 | -> | Plus |
| arm_2L | 17408893..17409023 | 4700..4830 | 100 | -> | Plus |
| arm_2L | 17409091..17409299 | 4831..5039 | 100 | -> | Plus |
| arm_2L | 17409359..17409405 | 5040..5086 | 100 | | Plus |
BS25537.pep Sequence
Translation from 16 to 5085
> BS25537.pep
MSDDTSASGGTSAPFPSPVTADPEPGATASKLPGPIRSNIPTPATSGTGI
PQPSKMKAPSSFGSTGSVSKIGRPCCNHTTPKSGPPPREATSMSRESDDN
LSSINSAYTDNSSAVLTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAG
EWAGVVLDEPNGKNDGCVSGKRYFQCEPKRGIFSRLTRLTTYPLAGAQTP
TSPLAKSSPDRSRTVSPTASIRSSMLRSPGIGGKNGMAVGDRVIVSSGFG
SRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVF
VPIAKVSLSPSSKKTRLSRTGSRESLTSIGTMNSIATTATSRMRMNAQRK
SSTPVKPILATPKSQFSMQDLLREKQQHVEKLMVERDLDREDAQNQALQL
QKNINELKARIVELESALDNERKKTEELQCSIDEAQFCGDELNAQSQVYK
EKIHDLESKITKLVSATPSLQSILPPDLPSDDGALQEEIAKLQEKMTIQQ
KEVESRIAEQLEEEQRLRENVKYLNEQIATLQSELVSKDEALEKFSLSEC
GIENLRRELELLKEENEKQAQEAQAEFTRKLAEKSVEVLRLSSELQNLKA
TSDSLESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQLNVQKAD
SSALDDMLRLQKEGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQI
SDLKQLAEQEKLVREMTENAINQIQLEKESIEQQLALKQNELEDFQKKQS
ESEVHLQEIKAQNTQKDFELVESGESLKKLQQQLEQKTLGHEKLQAALEE
LKKEKETIIKEKEQELQQLQSKSAESESALKVVQVQLEQLQQQAAASGEE
GSKTVAKLHDEISQLKSQAEETQSELKSTQSNLEAKSKQLEAANGSLEEE
AKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAANAALEKVN
KEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSDEIA
TGHKELTSKADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEK
SFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEK
MASEDAQKIADLKTLVEAIQVANANISATNAELSTVLEVLQAEKSETNHI
FELFEMEADMNSERLIEKVTGIKEELKETHLQLDERQKKFEELEEKLKQA
QQSEQKLQQESQTSKEKLTEIQQSLQELQDSVKQKEELVQNLEEKVRESS
SIIEAQNTKLNESNVQLENKTSCLKETQDQLLESQKKEKQLQEEAAKLSG
ELQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQEL
LVKSQENEGNLQGESLAVTEKLQQLEQANGELKEALCQKENGLKELQGKL
DESNTVLESQKKSHNEIQDKLEQAQQKERTLQEETSKLAEQLSQLKQANE
ELQKSLQQKQLLLEKGNEFDTQLAEYQKVIDEMDDAASVKSALLEQLQNR
VAELETALRQANDAQKTAYLETKELRRQLESLELEKSREVLSLKAQMNGA
SSRSGKGDEVESLDIETSLAKINFLNSIIADMQQKNDALKAKVQTLETLP
MDFTKPHAFDALTKRKPAPRLFCDICDEFDQHDTEDCPIQGSEDQDYSTP
SSESNNNEKERKLPAPRKYCDSCEVFGHDTSECADDETY*
BS25537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CLIP-190-PB | 1689 | CG5020-PB | 1..1689 | 1..1689 | 8359 | 100 | Plus |
| CLIP-190-PA | 1690 | CG5020-PA | 1..1690 | 1..1689 | 8347 | 99.9 | Plus |
| CLIP-190-PM | 1668 | CG5020-PM | 1..1668 | 1..1689 | 8226 | 98.8 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 1..1653 | 1..1689 | 8115 | 97.8 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 6..1623 | 73..1689 | 7885 | 99.1 | Plus |
