BS25626.complete Sequence
2597 bp assembled on 2011-08-23
GenBank Submission: KX803873
> BS25626.complete
GAAGTTATCAGTCGACATGGCAAAAATAAAGAAAAAGGAGGCGAAAGCTA
AACCTTTGACTCGCAAGGAGCAGAGAAAACAGAAGTCGGAGTTCAAAAAA
CAGAATAAACGACTTTATTTCGCCGGCAAAACTAACGGAACACAGCGCGT
GGCGGCGGCGGCAGAGGCGTTGGCAGCGCAGTCGCAGCTGGGCAAAAACA
AGAAGAAGAAACGGAGCAAGAAGCCCAAAATAATAAATCCAGATGAAATA
CCCAAGGAGCAACTTTTGTCCGGTGAAATAGACAGCGACGATGACGAGTC
CATAGATTCGGATTTCAGCGATGCGGAGGTGGATGCTCTGCTGCCCGCAA
GGGAAAAGATGGAAGTCTATGAACCTCTGGGAAAAAAGGTCAAGAAAACG
ACAGGAGGCGCCATCCAAAGACAGGATGAAGAGGCGGTCAGGCGGAAGGA
ACTGCGCCAGCAAAAGGAACTGGAGAGCAAGTCCAAGAAGCAGCGAATCA
AGCAACTTCGCATAGAGAACGAGGAGGATGATCGCGAGATCAACAAGCTG
GAAAAGAAGCTGAAGCTCAACAAATCCAAGGACAAAAACCGCTTGGTGCG
GAAGATGTTCAATGATGGCCTGGACTACCTGCTTGACTTTGTCCTGGATG
ACGAGGAGGAGAAGCGGAAGTGGGAGGAGAAGCAGGAACGTAAGAAAAAG
CTGAAGGAGCAGCAAGAAAAGGAGGAGGCGGGAATGTGGAGCGATGAGGA
AGAGGATAAGGAGGACAGGGATGAGCCCATGGATAACTTCTCAGAAGATG
ACAGTGGCTCTGAGGGTGAAGATGATGATGAAGACCTAACTGGAGAGGAA
GAACAAAGCGAGGAGGATTCGGAGCAGGAAGAGAATGCACCTAAGATTAA
AGAGGACATCTACGGACGCAAACGCGACGCCGAGGGAAACATCCTGCCTG
ATCCCGTGGAGCTCGAGGCCTCAGCCGCCGGTCAAAAGTACATACCGCCA
CATCAGCGAGCTTTGATGGCAGCCAGCGCGGGATCAAGTGAAAAACAGGC
AGAGATACTAGCTCGCCTTCTAAAGCAATGCAAGGGTCTGCTCAATCGTT
TGTCAGAAGCGAATCTGCACAAGATTGCCGCCGGCATCGAGGAGCTGTAC
ATGAAAAACTCCCGCTACAACATGAACGAAACACTAACCAAGTTAATTCA
AGAAGCCCTTCTCGGCTACACGCGAACCAACGAGCGAATGGTACAGGAAC
ACATGGTGCTGCTGGCCTACCTACATGCCCAGGTTGGCAGCGAGATTGGA
GCGCATTTCCTGCAGACTTTTGTGGAGTTATTCGATGGTTATGTCAAGAA
CATCGCTACCCTGGAGGTGGAGGATAAGCAGCTGAATAACCTAGTACTGG
TGCTCTGCTACATGTACCTCTTCAAGATCTACGAGCTGAATTTGCTGATG
GAGCTCATAGGCAAATTGTCAGATCAGCTTTGCGAGAAGAGCGTGGAGTG
CCTTTTGCTGATCTTCCAGTCCATTGGCTTCCGGCTGCGCAAGGACGATC
CACTGGCCTTTAAGACCATGATGCAAAAAGTTCAATCGCAAATTGCTAGT
GCCCCACTGGAACTGAAAGAGAATCCACGCCTGCGTTTCATGGTCGATAT
TCTAAATGCAGTCAAAAACAACAATATGCAAAAGCTGCCGCAGTATGATC
CCGAGTTGGCGGAGAATCTGCGAAAGCGTTTGAAGGCCATGCTGAAGAAT
GATCGCTACGTGGTGACTCTGAACATAACCCTGGAGGACCTCCTGCGTGC
TGATAAAGTGGGCAAATGGTGGATTGTGGGCTCTGCCTGGACGGGAAATC
TGGATGAGATGGGATCCGCCAAGCAAAAGCAGGATAAGAACTCATCGAAG
TCTGCCAACGGAGGTTTTGCGGATCAGCTACTGGAGCTGGCCAGAAAGCA
GCAGATGAACACAGCCGAAAGGAGGAATATCTTCTGCATCATCATGAGCG
CCGCCGATTATGTGGACGCCTTTGAGAAGATTCTGCATTTGTCTCTGAAG
GACCAGCGAGCGGTGGCCTACGTGATCATCCATTGCGCTCTGAATGAGAA
GCGTGCTAACCCCTATTACGCTCATTTGGCACTTAAGTTCTGTCAATTCA
ACAGAAAGTATCAACTGGCTTTCCAGTTTGCCAGTTGGGACAGAATCAAT
GATATCGAAAAGCTTTCCAAGCCGCAGATTCGCAACCTGGCTAGTTTTCT
GCAGCAAGTAATCCTAGCTGCTGGTCTGCAGCTGTCAGTGCTCAAAGTAG
TCGACTTTATGCAGCTGGACAAGCTCAGCTTTTACTTTATGAAGGAAGTG
ATGGTCAGGCTGCTTTTGGCTAACGATGAACGCGAGATTTATCAGACGTT
CGAAAGAGTTGCCAAAAACACCAAACTGCAGCAGTTTAAGCAAAGCGTAA
GGCTCTTCCTGCAGCATTTTCTTTTGCAAGAGGAACAGCTGGACAAACTT
AAGCTGAAGGACGAGGATCGACAGCTTCTGCAGCAGCGCGTTGATCACAT
AGACAAACTTTTAGCCTATGTGGACCTGTAGAAGCTTTCTAGACCAT
BS25626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9004-RA | 2565 | CG9004-PA | 1..2565 | 17..2581 | 12825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9004-RA | 2708 | CG9004-RA | 69..2633 | 17..2581 | 12825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2374729..2376413 | 897..2581 | 8425 | 100 | Plus |
| 3L | 28110227 | 3L | 2373796..2374675 | 17..896 | 4400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:06:07 has no hits.
BS25626.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:35:02 Download gff for
BS25626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9004-RA | 69..2633 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:20 Download gff for
BS25626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9004-RA | 69..2633 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:24 Download gff for
BS25626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9004-RA | 69..2633 | 17..2581 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:24 Download gff for
BS25626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2373796..2374675 | 17..896 | 100 | -> | Plus |
| 3L | 2374729..2376413 | 897..2581 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:20 Download gff for
BS25626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2373796..2374675 | 17..896 | 100 | -> | Plus |
| arm_3L | 2374729..2376413 | 897..2581 | 100 | | Plus |
BS25626.pep Sequence
Translation from 16 to 2580
> BS25626.pep
MAKIKKKEAKAKPLTRKEQRKQKSEFKKQNKRLYFAGKTNGTQRVAAAAE
ALAAQSQLGKNKKKKRSKKPKIINPDEIPKEQLLSGEIDSDDDESIDSDF
SDAEVDALLPAREKMEVYEPLGKKVKKTTGGAIQRQDEEAVRRKELRQQK
ELESKSKKQRIKQLRIENEEDDREINKLEKKLKLNKSKDKNRLVRKMFND
GLDYLLDFVLDDEEEKRKWEEKQERKKKLKEQQEKEEAGMWSDEEEDKED
RDEPMDNFSEDDSGSEGEDDDEDLTGEEEQSEEDSEQEENAPKIKEDIYG
RKRDAEGNILPDPVELEASAAGQKYIPPHQRALMAASAGSSEKQAEILAR
LLKQCKGLLNRLSEANLHKIAAGIEELYMKNSRYNMNETLTKLIQEALLG
YTRTNERMVQEHMVLLAYLHAQVGSEIGAHFLQTFVELFDGYVKNIATLE
VEDKQLNNLVLVLCYMYLFKIYELNLLMELIGKLSDQLCEKSVECLLLIF
QSIGFRLRKDDPLAFKTMMQKVQSQIASAPLELKENPRLRFMVDILNAVK
NNNMQKLPQYDPELAENLRKRLKAMLKNDRYVVTLNITLEDLLRADKVGK
WWIVGSAWTGNLDEMGSAKQKQDKNSSKSANGGFADQLLELARKQQMNTA
ERRNIFCIIMSAADYVDAFEKILHLSLKDQRAVAYVIIHCALNEKRANPY
YAHLALKFCQFNRKYQLAFQFASWDRINDIEKLSKPQIRNLASFLQQVIL
AAGLQLSVLKVVDFMQLDKLSFYFMKEVMVRLLLANDEREIYQTFERVAK
NTKLQQFKQSVRLFLQHFLLQEEQLDKLKLKDEDRQLLQQRVDHIDKLLA
YVDL*
BS25626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9004-PA | 854 | CG9004-PA | 1..854 | 1..854 | 4317 | 100 | Plus |
| ncm-PA | 1330 | CG12750-PA | 80..833 | 5..771 | 208 | 18 | Plus |
| CG2839-PA | 826 | CG2839-PA | 435..716 | 5..306 | 185 | 21.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 306..554 | 5..289 | 179 | 23 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3872..4260 | 7..356 | 179 | 20.8 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3911..4299 | 7..356 | 179 | 20.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 312..590 | 5..306 | 178 | 24 | Plus |
| CG2839-PA | 826 | CG2839-PA | 444..744 | 2..295 | 178 | 22.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 493..741 | 3..297 | 178 | 22.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 324..608 | 5..306 | 170 | 22.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3547..3900 | 7..321 | 166 | 20.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4002..4355 | 7..321 | 165 | 20.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4587..4940 | 7..321 | 164 | 21.1 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4260..4615 | 5..321 | 162 | 19.6 | Plus |
