BS25630.complete Sequence
2897 bp assembled on 2011-08-23
GenBank Submission: KX804962
> BS25630.complete
GAAGTTATCAGTCGACATGAATTTCACAAGTCGCGCCAACTGCAAATGCC
CGCATAGCCAAAAGCACCAGCAGAAGCCCGCTCTGATCAAGAGTCACACC
TGCGCCTATCAGCTGCAGGATCTGACAGGATATAATCGCGCCCTGATGCC
TCCGCTGGATAACACGGACTTTAGCAATGCCTGGCGGCAGGTGAACAACA
ACACCACCAGCCAATCCTGCGCCTACCACCAGCAGCGGCAGCAGCAGCAG
CAGCAGCAGGATGCAAAGGATTCCAAGAGGCACTATCACCATCACACCTG
TCCAAGACAGCGGAAAAAGTCCATGACCCCGGTGGAGCCAACGCATTTGT
GTCAAAAGCACCAGGAAGCCAAGCAGCGGCGATCTAGATCCGCATCTGCC
AAGCCGCGCAGGAACAGTTCGTATCACTCCTATGACGACTTGGATGTCTC
ATCCGCGGTACTCAATGCGGAGCGAAAGGTGGTGGCCAGTTTAAAGTATC
TATGCGCCTGCACGGGAGCCACTTTGAGGAATCTCTCCAAGAAAACCAAG
GATCTGCATGCCAAAAACTATACCTACACGAAGCCCACGTGGCGCCTTTG
GGGCGAAGAGCACGAGAAGAATGCAATTTTCACCGTTTACCTGAAGAAAG
TGCGATACCACCGACCGACGCCCACAGCCAGCAATGACTCAGATGATGAG
ATTTCCCATCTGGAGTGGGAGACTGTACGCGTGCGTTTCGTTAAGGCGGC
TACATTGGCTCGATTGGTGGAGGCGTTAGCCACCGACGACGGCGAGCTGG
AGTCCACCTTCATCAACGTGTTCCTGTCCACATATCGCACCTTCTCCACA
CCCAAGCAGGTGCTCAGTCTGCTGACGCAACGGTACGATGCTCTGCATGA
GAAGCACCTGGAGGAGTTGGAGCAGGCACAGCAAAATGGACAGGTCATGG
ATCCCGCCTACGATCCACACGCCTCCATTCACGAGCAGCACAAGAAAACC
CTAGTCTCAGCGCTGCACGTCTGGCTGGATGGATTCCCGGAGGATTGGCA
CGAGGATAACCTGCAACAGATCTTGGCATTTGCCACCAAGCGGCTGAAAC
GATCCGATCTGCACATCAAGGTGCTGAATCGTCTGGAACGGCTCATCAAA
CAGTCTCTCTATGGAAATGGAGGAGGAAGCGGTGGCTCGGAGAACAATGG
TCATTCGTGGCTTTCCGCAGCGCGCTCACAACAGATGCAGCAATTCATGA
TTCCCACTCACTATGGCTCTTCGTATGACCTCACGGATCAGTTCAATGGC
ATGTACCTCTCGCCAATGGGCCACGGGCCCATCTATCGTGGACCTACCCA
CTTTCTGCAGGCATTCCGTTTTCCGCATGTGCCCGTCCGGCATTTTGCTG
AGCAGTTGACCCGTATGGATACGGAACTCTTTAAGCGACTGATTCCCCAC
CAGTGCCTCGGACACACGTGGGCACGACGTGATAGTGGAGGATCCGAGAC
TGTGGTGGCCACCATCAACCAGTTTAATGCAGTGCTCTTCCGGGTGGTGT
CCAGTATCCTGATCGATCGCCTGAAACCTCAGGAGCGCGCTCTGAACATT
TCACGATGGATTGATATTGCCCAAGAGTTGCGCATGCTCAAAAACTTTAG
TTCGCTCAAGGCCATCATTTCGGCTCTAAACTCCAATTCAATATACCGCC
TCTCCAAGATCTGGGAAGTGCTGCCTAAAGAAAGGATGGAAGTCTTTACG
GAGCTGGCGAATATTTGCTCGGAGGATAACAATGCTTGGACTCTGCGAGA
AGTGTTGAAACGAGAAGGAACGGCCAAAAATCCAGATCCAGGCAGTGATC
ACAGCGATAGGCATCTGCAGAAGCTTATTCTGAATTTGGGAACACAAACA
TCGCATGGAACGATACCCTATTTGGGTACATTCCTTACCGACCTGACCAT
GATCCATACGGCCAATCCGGACTACCTCACCGAGAATAAGCTCATAAACT
TCGACAAGAAGCGCAAGGAGTTCGAAGTTCTGGCCCAGATCAAGTTACTT
CAGGGAGCAGCTAACACATATAATCTCCAGGCGGATGCGCTCTTTGATCA
TTGGTTCAACTCAATGCCAGTGTTTGATGAGCGTGAAGCCTTTGAGCTGA
GTTGTCGACTGGAACCACCACCGCCGGCGCCACGGAAATCGGTGGTCAGC
ACTAACACCTCTTTAACAAACACGACCGCCTCATCGACGGCTTCTATTAT
GGGCCACCGCAAGACTGACTCCATACACTCGAATTCGAGCAGCGGAGCGG
GATCACAGTTCTACTGCGAACTAAACAGTAGTACCAGCTCCAGACATAAC
TCCTTGGATCGGGATGTCCACCATCAGCACGCCTCCTTGATGTCCGCCTC
GAGTAGTGTGTCCAATCTGTCGTTGGACTCCAGTAACTCCGGCGGTCGGC
AGTCCGGCAAGCTGACCCACTCTCAGTCTATGGGAAATGGTCTGAAATCT
CACGGAAATGGCACTACGAATGGTGGATCGCCCCATATCAATGCTCAGTT
GGTGCAACCATCAAGTGGAACCCCTCACTCTGCTCCCGATTTCTATATCA
TTCGGGTGACCTATGAAACAGACAACATCGAGCTGGATGGGATTGTGCTG
TACAAGAGTATTATGCTGGGAAATAACGAGCGCACGCCGCAGGTTATCCG
AAATGCGATGCTTAAATTGGGTCTGGAGGATGATCCGGATAGGTTTACTT
TGGCGCAGGTCCTACCCGATAAGGAACTGGTGATGCCGAAGAATGCGAAT
GTCTACTACGCGGTTAACACGAACTACAACCTCAACTTCATCCTAAGACC
GCGAAAGGAAGAGGGTGTGGCAGGAAGCTAGAAGCTTTCTAGACCAT
BS25630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-RE | 2922 | CG8865-PE | 1..2865 | 17..2881 | 14325 | 100 | Plus |
| Rgl-RA | 2865 | CG8865-PA | 1..2865 | 17..2881 | 14325 | 100 | Plus |
| Rgl-RC | 2325 | CG8865-PC | 27..2325 | 583..2881 | 11495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-RE | 4564 | CG8865-RE | 773..3637 | 17..2881 | 14325 | 100 | Plus |
| Rgl-RA | 4564 | CG8865-RA | 773..3637 | 17..2881 | 14325 | 100 | Plus |
| Rgl-RC | 3754 | CG8865-RC | 529..2827 | 583..2881 | 11495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13907824..13908970 | 2881..1735 | 5735 | 100 | Minus |
| 3L | 28110227 | 3L | 13913962..13914526 | 583..19 | 2825 | 100 | Minus |
| 3L | 28110227 | 3L | 13909255..13909772 | 1583..1066 | 2590 | 100 | Minus |
| 3L | 28110227 | 3L | 13909832..13910215 | 1069..686 | 1920 | 100 | Minus |
| 3L | 28110227 | 3L | 13909031..13909186 | 1735..1580 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 13910483..13910587 | 686..582 | 525 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 02:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5594..5677 | 195..271 | 134 | 66.7 | Plus |
BS25630.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:35:03 Download gff for
BS25630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RA | 752..3616 | 17..2881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:35 Download gff for
BS25630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RA | 773..3637 | 17..2881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:34 Download gff for
BS25630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RA | 773..3637 | 17..2881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:34 Download gff for
BS25630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13907824..13908969 | 1736..2881 | 100 | <- | Minus |
| 3L | 13909031..13909183 | 1583..1735 | 100 | <- | Minus |
| 3L | 13909256..13909768 | 1070..1582 | 100 | <- | Minus |
| 3L | 13909832..13910215 | 686..1069 | 100 | <- | Minus |
| 3L | 13910484..13910585 | 584..685 | 100 | <- | Minus |
| 3L | 13913962..13914527 | 17..583 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:35 Download gff for
BS25630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13900924..13902069 | 1736..2881 | 100 | <- | Minus |
| arm_3L | 13902131..13902283 | 1583..1735 | 100 | <- | Minus |
| arm_3L | 13902356..13902868 | 1070..1582 | 100 | <- | Minus |
| arm_3L | 13902932..13903315 | 686..1069 | 100 | <- | Minus |
| arm_3L | 13903584..13903685 | 584..685 | 100 | <- | Minus |
| arm_3L | 13907062..13907627 | 17..583 | 99 | | Minus |
BS25630.pep Sequence
Translation from 16 to 2880
> BS25630.pep
MNFTSRANCKCPHSQKHQQKPALIKSHTCAYQLQDLTGYNRALMPPLDNT
DFSNAWRQVNNNTTSQSCAYHQQRQQQQQQQDAKDSKRHYHHHTCPRQRK
KSMTPVEPTHLCQKHQEAKQRRSRSASAKPRRNSSYHSYDDLDVSSAVLN
AERKVVASLKYLCACTGATLRNLSKKTKDLHAKNYTYTKPTWRLWGEEHE
KNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKAATLARL
VEALATDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEE
LEQAQQNGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHEDNLQ
QILAFATKRLKRSDLHIKVLNRLERLIKQSLYGNGGGSGGSENNGHSWLS
AARSQQMQQFMIPTHYGSSYDLTDQFNGMYLSPMGHGPIYRGPTHFLQAF
RFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSETVVATI
NQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAI
ISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKRE
GTAKNPDPGSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTAN
PDYLTENKLINFDKKRKEFEVLAQIKLLQGAANTYNLQADALFDHWFNSM
PVFDEREAFELSCRLEPPPPAPRKSVVSTNTSLTNTTASSTASIMGHRKT
DSIHSNSSSGAGSQFYCELNSSTSSRHNSLDRDVHHQHASLMSASSSVSN
LSLDSSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINAQLVQPSS
GTPHSAPDFYIIRVTYETDNIELDGIVLYKSIMLGNNERTPQVIRNAMLK
LGLEDDPDRFTLAQVLPDKELVMPKNANVYYAVNTNYNLNFILRPRKEEG
VAGS*
BS25630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-PE | 973 | CG8865-PE | 1..954 | 1..954 | 5028 | 100 | Plus |
| Rgl-PA | 954 | CG8865-PA | 1..954 | 1..954 | 5028 | 100 | Plus |
| Rgl-PC | 774 | CG8865-PC | 2..774 | 182..954 | 4007 | 99.1 | Plus |
| Rgl-PD | 774 | CG8865-PD | 2..774 | 182..954 | 4007 | 99.1 | Plus |
| Rgl-PB | 774 | CG8865-PB | 2..774 | 182..954 | 4007 | 99.1 | Plus |
