BS25636.complete Sequence
4205 bp assembled on 2011-10-14
GenBank Submission: KX801225
> BS25636.complete
GAAGTTATCAGTCGACATGCCAGCTGGACGAGAAACTGTGACCAAGCAGC
GCAGCATGGATGTGGAACGAAGGCGCCGGGCGAATACGCTCGAGCGCGAG
ATGCGCGATCCGACCAGCATCTGCAATGTGGACTGCCTGCTGGACACGGT
GTCGGCCTTGGTCAGCGATTGTGACCACGAGTCCCTGAGGCGGCTTAAGA
ACATCGAGCAGTATGCGGCCAAATACAAACCATTGGCAATGCAGATCAAT
CAGCTGCGCATGAACGTCGAGGATTTCCATTTTATCAAACTCATCGGCGC
CGGCGCCTTTGGAGAGGTGCAGCTGGTGCGGCACAAGTCCTCCAGCCAGG
TGTACGCCATGAAGCGGCTGTCCAAATTCGAGATGATGAAGCGACCGGAC
TCCGCGTTCTTCTGGGAGGAGCGACACATTATGGCGCACGCCAACTCCGA
ATGGATCGTTCAGCTGCACTTTGCATTTCAGGATGCCAAATACCTATACA
TGGTGATGGACTTTATGCCCGGCGGCGATATAGTCTCGCTGATGGGTGAC
TACGACATCCCGGAGAAGTGGGCCATCTTTTACACAATGGAGGTGGTTCT
CGCGCTGGACACCATTCACAATATGGGCTTCGTGCATCGGGACGTTAAGC
CGGATAATATGCTCCTCGACAGCTATGGCCACCTGAAATTGGCCGACTTT
GGCACCTGTATGCGAATGGGCGCCAATGGCCAAGTGGTGTCCAGCAATGC
CGTTGGCACGCCGGACTACATCAGCCCGGAGGTGCTGCAGTCGCAGGGCG
TGGACAACGAGTACGGGCGGGAATGCGACTGGTGGTCGGTGGGCATTTTC
CTCTACGAGATGCTGTTCGGCGAGACACCATTCTACGCAGACTCGCTGGT
GGGCACCTACGGCAAGATCATGGACCACAAGAACTCGCTTAGCTTTCCAC
CCGAGGTTGAGATCAGCGAACAGGCGAAGGCACTGATCCGCGCCTTTCTC
ACGGACCGAACGCAACGTTTGGGTCGCTACGGCATCGAGGACATTAAGGC
GCATCCGTTTTTCCGAAATGATACCTGGTCGTTCGACAACATTCGCGAGA
GTGTGCCGCCTGTGGTGCCCGAACTCTCCTCCGACGATGATACGCGAAAT
TTCGAGGACATTGAGCGCGATGAGAAGCCGGAGGAAGTGTTTCCCGTACC
CAAGGGCTTCGATGGCAATCACTTGCCCTTCATCGGCTTTACGTATACGG
GTGACTATCAGCTGCTGTCTAGCGACACCGTGGATGCGGAGTCGAAGGAG
GCCAATGTGGCAAACAGCGGGGCGGCCAGCAATAATCACGGCCACGGTCA
TAATCACCGCCATCGGCCGTCGAATTCCAACGAGCTGAAGCGCCTGGAGG
CGCTGCTCGAGCGGGAGCGTGGCAGGTCGGAAGCCTTGGAGCAGCAGGAT
GCTGGACTGCGGCAGCAGATTGAGCTGATAACAAAACGCGAAGCGGAGCT
GCAGAGGATTGCCTCAGAGTACGAGAAGGATCTGGCTTTGCGTCAACACA
ACTACAAGGTGGCCATGCAGAAGGTGGAGCAGGAGATCGAGCTGCGCAAG
AAGACGGAGGCACTGCTCGTGGAAACGCAGCGCAATCTGGAAAACGAGCA
AAAGACGCGGGCACGCGACCTCAATATCAACGACAAGGTGGTCTCACTCG
AAAAGCAGCTGCTTGAGATGGAGCAGAGCTACAAAACGGAGACGGAGAAC
ACTCAAAAGCTGAAAAAGCACAATGCCGAGCTGGACTTCACGGTCAAGTC
GCAGGAGGAGAAGGTGCGCGACATGGTCGACATGATCGACACGCTACAAA
AGCATAAGGAGGAGCTCGGCCAGGAGAATGCCGAGCTGCAGGCGCTGGTG
GTGCAGGAGAAGAATCTGCGATCGCAGCTCAAGGAGATGCACAAGGAGGC
CGAGAATAAGATGCAGACGCTGATCAACGACATTGAACGTACTATGTGTC
GCGAACAAAAGGCGCAAGAGGACAACCGGGCGTTGCTTGAGAAGATCAGC
GACTTGGAGAAGGCGCATGCCGGCCTCGACTTCGAACTGAAGGCGGCCCA
GGGCCGCTATCAGCAGGAGGTCAAGGCACACCAAGAGACGGAGAAGTCGC
GGCTCGTCTCCCGCGAGGAGGCCAATCTGCAGGAGGTAAAGGCGCTGCAG
TCCAAGCTCAACGAGGAGAAGTCCGCTCGCATCAAGGCCGATCAGCATTC
TCAGGAAAAAGAGCGTCAGCTGAGCATGCTGTCCGTGGACTATCGCCAAA
TCCAACTACGTCTCCAGAAGCTCGAAGGCGAGTGCCGCCAGGAGTCGGAG
AAGGTGGCCGCTCTGCAGTCACAGCTCGACCAGGAGCACAGCAAACGCAA
TGCCTTGCTATCGGAACTCAGCCTGCACAGCTCGGAGGTGGCCCACCTGC
GATCCCGCGAAAACCAGCTACAGAAGGAACTGTCTACCCAGCGCGAGGCG
AAGCGACGCTTCGAGGAGGACCTCACCCAGCTAAAGAGCACACACCACGA
AGCGCTGGCCAATAACCGTGAGCTTCAGGCCCAACTCGAGGCGGAGCAGT
GCTTCTCGCGGCTGTACAAGACACAGGCGAACGAGAATCGCGAAGAGAGC
GCTGAGCGGCTGTCGAAGATCGAGGATCTTGAGGAGGAACGCGTCTCACT
CAAGCACCAGGTACAGGTGGCCGTTGCCCGTGCAGACTCAGAGGCTTTGG
CCCGATCCATTGCCGAAGAGACGGTGGCGGATCTCGAAAAGGAGAAGACT
ATCAAGGAGCTAGAGCTGAAGGACTTCGTCATGAAGCATCGCAACGAGAT
CAACGCCAAGGAGGCGGCCCTAGCCACGCTCAAGGAGGCCGAAAACGAAC
TGCACAAGAAGCTGGGCCAGAAGGCAGCCGAGTACGAGGATCTTGTCCAG
CAGCACAAGAAGCAGCAGGAGGAGCTTGCGCTGATGAGAAGCAGCAAGGA
CGAAGAGATCACCAAGCTGCTGGATAAGTGCAAGAACGAAGTGCTTCTCA
AACAGGTGGCAGTGAACAAGTTGGCCGAAGTGATGAATCGTCGCGACTCC
GACCTGCCCAAACAAAAGAACAAGGCGCGCTCGACAGCCGAGCTGCGCAA
AAAGGAGAAGGAGATGCGTCGGCTGCAGCAGGAGCTCTCGCAGGAGCGCG
ACAAGTTCAACCAGCTGCTGCTCAAGCACCAGGACCTGCAGCAGCTGTGC
GCCGAGGAGCAGCAGCTCAAGCAGAAGATGGTCATGGAGATCGATTGCAA
GGCCACCGAGATCGAGAACCTGCAGAGCAAGCTCAACGAGACGGCGTCGC
TCTCCTCGGCGGACAACGATCCCGAGGATAGCCAGCACTCCTCTCTGCTC
TCCCTCACACAGGACTCGGTCTTCGAGGGCTGGCTAAGTGTGCCCAATAA
GCAGAATCGGCGACGTGGCCACGGCTGGAAGCGGCAGTACGTCATTGTGT
CGTCGCGCAAAATCATCTTCTACAATTCGGACATTGACAAGCACAATACC
ACGGATGCCGTGCTCATCCTGGACCTGAGCAAGGTGTACCACGTTCGTAG
CGTCACTCAGGGCGATGTCATACGCGCCGATGCCAAAGAGATTCCACGCA
TATTCCAGCTACTGTACGCCGGCGAGGGCGCCTCCCATCGTCCCGACGAG
CAGAGCCAGTTGGATGTGAGCGTGCTGCACGGTAATTGCAACGAGGAGCG
CCCGGGCACCATTGTCCACAAAGGTCACGAGTTCGTTCACATTACCTACC
ACATGCCCACGGCTTGCGAGGTGTGCCCGAAGCCTTTGTGGCACATGTTC
AAGCCGCCGGCGGCTTACGAATGCAAGAGATGCCGCAACAAGATACACAA
GGAGCATGTGGACAAACACGACCCGCTGGCGCCCTGTAAGCTCAATCACG
ATCCGCGCAGCGCCCGTGACATGCTGCTGCTGGCCGCCACGCCCGAGGAT
CAATCGCTGTGGGTGGCGCGCCTGCTGAAGCGTATCCAAAAGAGTGGATA
TAAGGCGGCTTCGTACAACAACAACAGCACCGATGGCAGCAAGATATCGC
CCAGCCAATCGACGCGCTCCTCCTACAAGCCGTATGCGGTTAATGTCCAA
CGCTCCGCCACGCTGCCAGCCAATTCATCGCTGAAATGAAAGCTTTCTAG
ACCAT
BS25636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rok-RA | 4173 | CG9774-PA | 1..4173 | 17..4189 | 20865 | 100 | Plus |
| Rok-RD | 4146 | CG9774-PD | 34..4146 | 77..4189 | 20565 | 100 | Plus |
| Rok-RC | 4125 | CG9774-PC | 1..4088 | 17..4104 | 20440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rok-RA | 7190 | CG9774-RA | 1065..5239 | 16..4190 | 20875 | 100 | Plus |
| Rok-RD | 5293 | CG9774-RD | 127..4240 | 77..4190 | 20570 | 100 | Plus |
| Rok-RC | 5220 | CG9774-RC | 1065..5153 | 16..4104 | 20445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16627934..16630565 | 3110..479 | 13160 | 100 | Minus |
| X | 23542271 | X | 16627596..16627870 | 3385..3111 | 1375 | 100 | Minus |
| X | 23542271 | X | 16632444..16632701 | 482..225 | 1290 | 100 | Minus |
| X | 23542271 | X | 16626570..16626796 | 4104..3878 | 1135 | 100 | Minus |
| X | 23542271 | X | 16627033..16627230 | 3775..3578 | 990 | 100 | Minus |
| X | 23542271 | X | 16627301..16627496 | 3579..3384 | 980 | 100 | Minus |
| X | 23542271 | X | 16632768..16632914 | 224..78 | 735 | 100 | Minus |
| X | 23542271 | X | 16626861..16626968 | 3879..3772 | 540 | 100 | Minus |
| X | 23542271 | X | 16626162..16626250 | 4190..4102 | 445 | 100 | Minus |
| X | 23542271 | X | 16636221..16636284 | 79..16 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:45:12 has no hits.
BS25636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:12 Download gff for
BS25636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rok-RA | 1071..5242 | 17..4188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:38 Download gff for
BS25636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rok-RA | 1066..5237 | 17..4188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:25 Download gff for
BS25636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rok-RA | 1066..5237 | 17..4188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:25 Download gff for
BS25636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16627596..16627870 | 3111..3385 | 100 | <- | Minus |
| X | 16626164..16626247 | 4105..4188 | 100 | <- | Minus |
| X | 16626570..16626794 | 3880..4104 | 100 | <- | Minus |
| X | 16626861..16626966 | 3774..3879 | 100 | <- | Minus |
| X | 16627035..16627228 | 3580..3773 | 100 | <- | Minus |
| X | 16627301..16627494 | 3386..3579 | 100 | <- | Minus |
| X | 16627934..16630562 | 482..3110 | 100 | <- | Minus |
| X | 16632445..16632701 | 225..481 | 100 | <- | Minus |
| X | 16632768..16632913 | 79..224 | 100 | <- | Minus |
| X | 16636222..16636283 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:38 Download gff for
BS25636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16520197..16520280 | 4105..4188 | 100 | <- | Minus |
| arm_X | 16520603..16520827 | 3880..4104 | 100 | <- | Minus |
| arm_X | 16520894..16520999 | 3774..3879 | 100 | <- | Minus |
| arm_X | 16521068..16521261 | 3580..3773 | 100 | <- | Minus |
| arm_X | 16521334..16521527 | 3386..3579 | 100 | <- | Minus |
| arm_X | 16521629..16521903 | 3111..3385 | 100 | <- | Minus |
| arm_X | 16521967..16524595 | 482..3110 | 100 | <- | Minus |
| arm_X | 16526478..16526734 | 225..481 | 100 | <- | Minus |
| arm_X | 16526801..16526946 | 79..224 | 100 | <- | Minus |
| arm_X | 16530255..16530316 | 17..78 | 100 | | Minus |
BS25636.pep Sequence
Translation from 16 to 4188
> BS25636.pep
MPAGRETVTKQRSMDVERRRRANTLEREMRDPTSICNVDCLLDTVSALVS
DCDHESLRRLKNIEQYAAKYKPLAMQINQLRMNVEDFHFIKLIGAGAFGE
VQLVRHKSSSQVYAMKRLSKFEMMKRPDSAFFWEERHIMAHANSEWIVQL
HFAFQDAKYLYMVMDFMPGGDIVSLMGDYDIPEKWAIFYTMEVVLALDTI
HNMGFVHRDVKPDNMLLDSYGHLKLADFGTCMRMGANGQVVSSNAVGTPD
YISPEVLQSQGVDNEYGRECDWWSVGIFLYEMLFGETPFYADSLVGTYGK
IMDHKNSLSFPPEVEISEQAKALIRAFLTDRTQRLGRYGIEDIKAHPFFR
NDTWSFDNIRESVPPVVPELSSDDDTRNFEDIERDEKPEEVFPVPKGFDG
NHLPFIGFTYTGDYQLLSSDTVDAESKEANVANSGAASNNHGHGHNHRHR
PSNSNELKRLEALLERERGRSEALEQQDAGLRQQIELITKREAELQRIAS
EYEKDLALRQHNYKVAMQKVEQEIELRKKTEALLVETQRNLENEQKTRAR
DLNINDKVVSLEKQLLEMEQSYKTETENTQKLKKHNAELDFTVKSQEEKV
RDMVDMIDTLQKHKEELGQENAELQALVVQEKNLRSQLKEMHKEAENKMQ
TLINDIERTMCREQKAQEDNRALLEKISDLEKAHAGLDFELKAAQGRYQQ
EVKAHQETEKSRLVSREEANLQEVKALQSKLNEEKSARIKADQHSQEKER
QLSMLSVDYRQIQLRLQKLEGECRQESEKVAALQSQLDQEHSKRNALLSE
LSLHSSEVAHLRSRENQLQKELSTQREAKRRFEEDLTQLKSTHHEALANN
RELQAQLEAEQCFSRLYKTQANENREESAERLSKIEDLEEERVSLKHQVQ
VAVARADSEALARSIAEETVADLEKEKTIKELELKDFVMKHRNEINAKEA
ALATLKEAENELHKKLGQKAAEYEDLVQQHKKQQEELALMRSSKDEEITK
LLDKCKNEVLLKQVAVNKLAEVMNRRDSDLPKQKNKARSTAELRKKEKEM
RRLQQELSQERDKFNQLLLKHQDLQQLCAEEQQLKQKMVMEIDCKATEIE
NLQSKLNETASLSSADNDPEDSQHSSLLSLTQDSVFEGWLSVPNKQNRRR
GHGWKRQYVIVSSRKIIFYNSDIDKHNTTDAVLILDLSKVYHVRSVTQGD
VIRADAKEIPRIFQLLYAGEGASHRPDEQSQLDVSVLHGNCNEERPGTIV
HKGHEFVHITYHMPTACEVCPKPLWHMFKPPAAYECKRCRNKIHKEHVDK
HDPLAPCKLNHDPRSARDMLLLAATPEDQSLWVARLLKRIQKSGYKAASY
NNNSTDGSKISPSQSTRSSYKPYAVNVQRSATLPANSSLK*
BS25636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rok-PA | 1390 | CG9774-PA | 1..1390 | 1..1390 | 7124 | 100 | Plus |
| Rok-PB | 1381 | CG9774-PB | 1..1381 | 1..1390 | 7062 | 99.4 | Plus |
| Rok-PD | 1381 | CG9774-PD | 12..1381 | 21..1390 | 7024 | 100 | Plus |
| Rok-PC | 1374 | CG9774-PC | 1..1370 | 1..1371 | 6994 | 99.6 | Plus |
| gek-PA | 1637 | CG4012-PA | 50..897 | 37..844 | 1015 | 31.9 | Plus |
