Clone BS25705 Report

Search the DGRC for BS25705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:257
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptBin1-RA
Protein status:BS25705.pep: full length peptide match
Sequenced Size:485

Clone Sequence Records

BS25705.complete Sequence

485 bp assembled on 2011-08-02

GenBank Submission: KX802807

> BS25705.complete
GAAGTTATCAGTCGACATGGCCAACGTGGAATCTATGATTGTGGAGGAAA
AGACGCAGGTCAAGCAGATTGACCGCGAGAAGACCTGTCCTATGCTGCTC
CGTGTCTTCTGCTCTACGGGACGACACCACTCCGTGTCGGAGTATATGTT
CGGCAACGTGCCCACCAACGAGCTTCAGATTTACACCTGGCAAGACGCCA
CCCTGCACGAACTGACCTCTCTGGTGCGAGACGTCAATCCGGACACCCGG
AAGAAGGGCACCTACTTTGACTTTGCTGTCGTGTACCCCAACTTCCGGAG
TAATCACTTCCAGATGCGCGAAATCGGAGTGACCTGCACGGGTCAAAAAG
GAATCGATGATAATAAGACACTTGCTCAGGCCAAATTCAGCATTGGAGAC
TTTCTGGACATCTCGATTACTCCGCCCAACCGACTGCCGCCAACCGCCAG
GCGCCAGCGTCCGTACTGAAAGCTTTCTAGACCAT

BS25705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Bin1-RC 453 CG6046-PC 1..453 17..469 2265 100 Plus
Bin1-RB 453 CG6046-PB 1..453 17..469 2265 100 Plus
Bin1-RA 453 CG6046-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Bin1-RC 1240 CG6046-RC 689..1144 14..469 2280 100 Plus
Bin1-RB 3336 CG6046-RB 2785..3240 14..469 2280 100 Plus
Bin1-RA 669 CG6046-RA 118..573 14..469 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16186252..16186640 469..81 1945 100 Minus
3R 32079331 3R 16186712..16186780 82..14 345 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:30:35 has no hits.

BS25705.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:38 Download gff for BS25705.complete
Subject Subject Range Query Range Percent Splice Strand
Bin1-RA 117..568 17..468 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:27 Download gff for BS25705.complete
Subject Subject Range Query Range Percent Splice Strand
Bin1-RA 117..568 17..468 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:05 Download gff for BS25705.complete
Subject Subject Range Query Range Percent Splice Strand
Bin1-RA 121..572 17..468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:05 Download gff for BS25705.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16186253..16186638 83..468 100 <- Minus
3R 16186712..16186777 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:27 Download gff for BS25705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12011975..12012360 83..468 100 <- Minus
arm_3R 12012434..12012499 17..82 100   Minus

BS25705.pep Sequence

Translation from 16 to 468

> BS25705.pep
MANVESMIVEEKTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMFGNVPT
NELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQM
REIGVTCTGQKGIDDNKTLAQAKFSIGDFLDISITPPNRLPPTARRQRPY
*

BS25705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Bin1-PC 150 CG6046-PC 1..150 1..150 798 100 Plus
Bin1-PB 150 CG6046-PB 1..150 1..150 798 100 Plus
Bin1-PA 150 CG6046-PA 1..150 1..150 798 100 Plus