Clone BS25719 Report

Search the DGRC for BS25719

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:257
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptrl-RC
Protein status:BS25719.pep: full length peptide match
Sequenced Size:1163

Clone Sequence Records

BS25719.complete Sequence

1163 bp assembled on 2011-08-02

GenBank Submission: KX806148

> BS25719.complete
GAAGTTATCAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTA
ATGGTACAGGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGG
GGACAAATATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGG
TGAAGGAGCTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACC
AAAGAGTTGCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGT
CAAAGGACTCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAA
CATTATTGATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGA
GAGATGTTTATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTA
CTTAAAACACAGAGGCTAAGTAATGATCACATCTGTTACTTCTTATATCA
GATATTGCGTGGACTCAAGTACATTCATTCCGCAAACGTCTTGCATCGGG
ACCTTAAGCCAAGTAATTTACTGTTGAACAAGACGTGCGACTTAAAAATT
TGCGACTTTGGATTGGCTCGTATTGCAGATCCCGAGCACGATCATACTGG
CTTTCTCACAGAATACGTTGCTACCCGATGGTATAGAGCACCTGAAATAA
TGCTTAACTCAAAAGGATACACCAAATCTATAGACATATGGTCCGTTGGC
TGCATTTTGGCTGAAATGTTAAGTAATCGGCCAATATTTCCTGGAAAACA
TTACCTGGATCAACTTAATCATATTCTTGGAGTATTGGGTTCACCGTCCC
GGGACGATTTAGAGTGTATTATTAATGAAAAGGCACGGAACTATTTGGAA
TCTTTACCATTTAAGCCAAATGTACCCTGGGCGAAACTATTTCCAAATGC
TGATGCGTTGGCTTTAGATCTCCTTGGAAAAATGTTAACATTTAACCCGC
ATAAACGGATTCCTGTCGAGGAAGCTCTTGCACATCCCTATTTAGAGCAA
TATTATGATCCTGGAGATGAGCCTGTCGCTGAAGTGCCATTTCGGATTAA
TATGGAAAATGATGACATTTCTCGAGATGCCCTGAAGTCGTTGATTTTTG
AAGAAACCTTAAAATTTAAGGAACGACAACCAGACAATGCGCCTTAAAAG
CTTTCTAGACCAT

BS25719.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
rl-RI 1131 CG12559-PI 1..1131 17..1147 5655 100 Plus
rl-RC 1131 CG12559-PC 1..1131 17..1147 5655 100 Plus
rl-RD 1131 CG12559-PD 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
rl-RI 2072 CG12559-RI 102..1233 16..1147 5660 100 Plus
rl-RC 1614 CG12559-RC 126..1257 16..1147 5660 100 Plus
rl-RD 1795 CG12559-RD 307..1438 16..1147 5660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1113198..1113485 548..835 1440 100 Plus
2R 25286936 2R 1212216..1212504 548..835 1290 97.2 Plus
2R 25286936 2R 1207919..1208207 548..835 1260 96.5 Plus
U 3151297 U 1722541..1722804 574..835 1100 96.2 Plus
2R 25286936 2R 1113535..1113725 831..1021 955 100 Plus
2R 25286936 2R 1208257..1208447 831..1021 955 100 Plus
U 3151297 U 1722854..1723044 831..1021 955 100 Plus
2R 25286936 2R 1212554..1212744 831..1021 895 97.9 Plus
2R 25286936 2R 1072281..1072441 16..176 805 100 Plus
2R 25286936 2R 1105844..1105981 410..547 690 100 Plus
2R 25286936 2R 1120623..1120750 1020..1147 640 100 Plus
2R 25286936 2R 1124961..1125088 1020..1147 640 100 Plus
2R 25286936 2R 1129252..1129379 1020..1147 640 100 Plus
2R 25286936 2R 1133392..1133519 1020..1147 640 100 Plus
2R 25286936 2R 1137600..1137727 1020..1147 640 100 Plus
2R 25286936 2R 1141916..1142043 1020..1147 640 100 Plus
2R 25286936 2R 1146059..1146186 1020..1147 640 100 Plus
U 3151297 U 2631243..2631370 1147..1020 640 100 Minus
2R 25286936 2R 1076635..1076761 175..301 635 100 Plus
2R 25286936 2R 1080331..1080441 302..412 555 100 Plus
2R 25286936 2R 1150145..1150219 1020..1094 360 98.7 Plus
Blast to na_te.dros performed on 2014-11-26 22:32:44 has no hits.

BS25719.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:42 Download gff for BS25719.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RE 81..1209 17..1145 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:36 Download gff for BS25719.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RE 86..1214 17..1145 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:00 Download gff for BS25719.complete
Subject Subject Range Query Range Percent Splice Strand
rl-RD 308..1436 17..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:00 Download gff for BS25719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1105847..1105981 413..547 100 -> Plus
2R 1113198..1113482 548..832 100 -> Plus
2R 1113537..1113725 833..1021 100 -> Plus
2R 1120625..1120748 1022..1145 100   Plus
2R 1072282..1072439 17..174 100 -> Plus
2R 1076635..1076761 175..301 100 -> Plus
2R 1080331..1080441 302..412 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:36 Download gff for BS25719.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 232561..232695 413..547 100 -> Plus
2RHet 239912..240196 548..832 100 -> Plus
2RHet 240251..240439 833..1021 100 -> Plus
2RHet 247339..247462 1022..1145 100   Plus
2RHet 198996..199153 17..174 100 -> Plus
2RHet 203349..203475 175..301 100 -> Plus
2RHet 207045..207155 302..412 100 -> Plus

BS25719.pep Sequence

Translation from 16 to 1146

> BS25719.pep
MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG
MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR
DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGL
KYIHSANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEY
VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQL
NHILGVLGSPSRDDLECIINEKARNYLESLPFKPNVPWAKLFPNADALAL
DLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMENDD
ISRDALKSLIFEETLKFKERQPDNAP*

BS25719.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
rl-PI 376 CG12559-PI 1..376 1..376 1980 100 Plus
rl-PC 376 CG12559-PC 1..376 1..376 1980 100 Plus
rl-PD 376 CG12559-PD 1..376 1..376 1980 100 Plus
rl-PE 376 CG12559-PE 1..376 1..376 1980 100 Plus
rl-PG 331 CG12559-PG 6..331 51..376 1713 99.1 Plus