BS25723.complete Sequence
1262 bp assembled on 2011-08-02
GenBank Submission: KX801102
> BS25723.complete
GAAGTTATCAGTCGACATGCCTAAGAATGGCGATGCCGGCAACCGGAGCG
GTTCCGGGACAACCAGCGACGGCTGCATCTATCCGGACGACGTCATAATG
GGCGTGGGTGTTGCATTCAACGTGCGGTACACGGGATGCGTTGAGGTCAA
GACCTCAATGAAATCCCTGGACTTCGAGACCCGTACGCAGTTAGCGCGAG
AGTGCATCAATCGAGTTTGCGAGGCGGCCGGTTTAAAGTCTGCTGGCAAG
CGGAGATTAACCAACTTCATATCGGATCGACCCAGCATGCAGCACGCCGG
CACCAACATCATCATTAATGTATCGAGCCGTGCTCTGTCGCTAAGCAACG
TGGAAACGGGCGAGGTTATAGCCAATCACAATATGCCGCGCATATCGTTC
GCGTCCGGCGGTGACAATGACACCCTCGACTTCCTCGCCTACATAGCCAA
GAATGAGGATGAATGGCGGGCATGTTATGTCCTGGAATGCGCTGGCGGCC
AAAGCGAGGATCTAATAGTGACCATTGGCAAGGCGTTTGCCTTGCGCTTC
AACGCTCTCAGTAGGCTCAATGATCCCTCGGCGGATTGTAACATCAATCA
AAGCTGCAAGGAGAATGTGAAGGAGTACTACAACGATTTGCCAAACAAGC
TGCCACCAGAAGTGCCGGAACCACAACAACAGCAGGTGCAGCAACCTCTC
CATCCGCATGCGCCTCGTGTGGCACAACTGAATCTGAAGAAGCCTCGCGA
TCGCCTGAGCAGCAACCTCATCGACCTCAACTCCCCGCCTCCCGATCAGA
CGACCAATAAGTTAGGCCACTTTGATCCCCTCCAAGCGACCACAGCTGCC
AATTCTGTTTTGCCCTCTGTTCGCGATGTGTTCGACGGACCGCAATGCCC
GCTCACAGCGGAGGTGTGGTTCCATGCGGGCATATCCAGACCAATATCGG
AGCGTTTGCTGCAGCAGGACGGCGACTTTCTGGTGCGCGAGTCACAGGGA
AAGCGGGGCCAGTACGTACTAACCGGATTAGAGGGCAAGACGCCCAAGCA
TCTGCTTCTCATCGATCCCGAGGGCGTGGTCCGAACCAAAGATCGCATCT
TCGACAGCATTAGCCATCTGATCAACTACCACTGGGCACACGCGCTGCCC
ATCATTTCGGAGGATTCCGAGCTGGTCTTGCGTAATCCGGTGCGAAGACC
CCAGCAGGATCAGGCTGCGTCGCCCATTACATCAGCATCTTCCTGAAAGC
TTTCTAGACCAT
BS25723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shc-RA | 1230 | CG3715-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shc-RA | 1600 | CG3715-RA | 134..1364 | 17..1247 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9427386..9428435 | 198..1247 | 5250 | 100 | Plus |
| 3L | 28110227 | 3L | 9427143..9427324 | 17..198 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6863 | 643..784 | 135 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6893 | 648..781 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6864 | 648..770 | 131 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2379 | 635..713 | 125 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2502 | 648..781 | 114 | 54.8 | Plus |
BS25723.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:40 Download gff for
BS25723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 144..1372 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:54 Download gff for
BS25723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 134..1362 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:29 Download gff for
BS25723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 134..1362 | 17..1245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:29 Download gff for
BS25723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9427143..9427324 | 17..198 | 100 | -> | Plus |
| 3L | 9427387..9428433 | 199..1245 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:54 Download gff for
BS25723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9420243..9420424 | 17..198 | 100 | -> | Plus |
| arm_3L | 9420487..9421533 | 199..1245 | 100 | | Plus |
BS25723.pep Sequence
Translation from 16 to 1245
> BS25723.pep
MPKNGDAGNRSGSGTTSDGCIYPDDVIMGVGVAFNVRYTGCVEVKTSMKS
LDFETRTQLARECINRVCEAAGLKSAGKRRLTNFISDRPSMQHAGTNIII
NVSSRALSLSNVETGEVIANHNMPRISFASGGDNDTLDFLAYIAKNEDEW
RACYVLECAGGQSEDLIVTIGKAFALRFNALSRLNDPSADCNINQSCKEN
VKEYYNDLPNKLPPEVPEPQQQQVQQPLHPHAPRVAQLNLKKPRDRLSSN
LIDLNSPPPDQTTNKLGHFDPLQATTAANSVLPSVRDVFDGPQCPLTAEV
WFHAGISRPISERLLQQDGDFLVRESQGKRGQYVLTGLEGKTPKHLLLID
PEGVVRTKDRIFDSISHLINYHWAHALPIISEDSELVLRNPVRRPQQDQA
ASPITSASS*
BS25723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shc-PA | 409 | CG3715-PA | 1..409 | 1..409 | 2142 | 100 | Plus |
