BS25724.complete Sequence
1274 bp assembled on 2011-08-02
GenBank Submission: KX805285
> BS25724.complete
GAAGTTATCAGTCGACATGTTAGCTACTCTTTGGATCATATTACTGAGTA
GCACCTTCGGTAAATGCCTCGACAATGGGCTTGCCAAAACTCCTCCAATG
GGTTGGCTTTCCTGGGAGAGATTTCGTTGCAACACGGATTGCGTGAACGA
TCCAGATAATTGCATTAGTGAACAACTATTTCAAACCATGACTGATATTG
TTGTGGCGGATGGATATGCATCTGTGGGCTATGAATACATAAATATCGAC
GATTGCTGGTTGGAAAAACATCGCAGTCACGATGGAAAATTGGTAGCTGA
TCGCAAACGTTTTCCGAACGGCATTAAAGCTTTGTCTGATTATATTCACT
CGAGAGGCCTCAAGTTTGGAATTTACGAGGACTACGGCAACTACACCTGC
GCCGGATATCCGGGCATTATTGGTTATGAGGAGAAGGATGCCCTTCAATT
CGCGGACTGGAATGTGGACTACGTGAAGCTAGATGGTTGCTATGCTCTGC
CCTACGATATGGATCATGGCTACTCCACTTTCGGTCGACTTCTGAACAGC
ACGGGCAAATCGATGGTGTATTCCTGCAGCTGGCCAGTTTATCAGATTTA
TGCGGGAATACAGCCAAACTACTCGGCCATCCAAACGCACTGCAACCTGT
GGAGGAACTATGACGACATCCAGGACTCGTGGGCATCCGTGGAGAATATA
ATCGATTATTATGGCAACAACCAGGACGTAATAGCGCCCAACGCAGGTCC
TGGTCATTGGAACGATCCAGATATGTTGATTATCGGAAATTTCGGACTGA
GTTACGAGCAAGCTAAAACCCAATTCGCAATTTGGTCAATTTTGGCCGCT
CCACTTTTGATGTCGGTTGATTTGAGAACGATTCGTCCGCAGTTTAAACA
CATTCTACAGAATCGAAAGATAATCGCCGTGGATCAAGATCCGCTTGGAA
TACAGGGAAGAAGGATTTATAAACACAAGGGCATTGAGATCTGGTCAAGA
CCGATTGGACCGCTCTATCAAAACTTTTACTCCTACGCAATTGCCTTTGT
GAATAGAAGAACTGATGGAACTCCATCGGATATTTCGGTTACTTTGAAAG
AATTGGGCTTGATTAACTTTTCTGGCTACAGAGTGGAGGACCTTTACGAA
AATGTTGACTATGGAGTTTTATATCCCAACACCAAAATCAAAGTGAAGGT
AAATCCTTCGGGCGTGGTTATGCTAAAAGGAGAAGTTCAGTACCCAGTTG
ACTTGTAAAAGCTTTCTAGACCAT
BS25724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5731-RA | 1242 | CG5731-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5731-RA | 1761 | CG5731-RA | 294..1536 | 17..1259 | 6215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10207920..10208351 | 775..344 | 2160 | 100 | Minus |
| 2L | 23513712 | 2L | 10207493..10207857 | 1139..775 | 1825 | 100 | Minus |
| 2L | 23513712 | 2L | 10208408..10208584 | 343..167 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10208645..10208796 | 168..17 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 10207310..10207432 | 1259..1137 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:31:53 has no hits.
BS25724.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:40 Download gff for
BS25724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 292..1526 | 22..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:08 Download gff for
BS25724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 299..1533 | 22..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:38 Download gff for
BS25724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 299..1533 | 22..1256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:38 Download gff for
BS25724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10207313..10207430 | 1139..1256 | 100 | <- | Minus |
| 2L | 10207494..10207856 | 776..1138 | 100 | <- | Minus |
| 2L | 10207920..10208351 | 344..775 | 100 | <- | Minus |
| 2L | 10208408..10208582 | 169..343 | 100 | <- | Minus |
| 2L | 10208645..10208791 | 22..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:08 Download gff for
BS25724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10207313..10207430 | 1139..1256 | 100 | <- | Minus |
| arm_2L | 10207494..10207856 | 776..1138 | 100 | <- | Minus |
| arm_2L | 10207920..10208351 | 344..775 | 100 | <- | Minus |
| arm_2L | 10208408..10208582 | 169..343 | 100 | <- | Minus |
| arm_2L | 10208645..10208791 | 22..168 | 100 | | Minus |
BS25724.pep Sequence
Translation from 16 to 1257
> BS25724.pep
MLATLWIILLSSTFGKCLDNGLAKTPPMGWLSWERFRCNTDCVNDPDNCI
SEQLFQTMTDIVVADGYASVGYEYINIDDCWLEKHRSHDGKLVADRKRFP
NGIKALSDYIHSRGLKFGIYEDYGNYTCAGYPGIIGYEEKDALQFADWNV
DYVKLDGCYALPYDMDHGYSTFGRLLNSTGKSMVYSCSWPVYQIYAGIQP
NYSAIQTHCNLWRNYDDIQDSWASVENIIDYYGNNQDVIAPNAGPGHWND
PDMLIIGNFGLSYEQAKTQFAIWSILAAPLLMSVDLRTIRPQFKHILQNR
KIIAVDQDPLGIQGRRIYKHKGIEIWSRPIGPLYQNFYSYAIAFVNRRTD
GTPSDISVTLKELGLINFSGYRVEDLYENVDYGVLYPNTKIKVKVNPSGV
VMLKGEVQYPVDL*
BS25724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5731-PA | 413 | CG5731-PA | 1..413 | 1..413 | 2255 | 100 | Plus |
| CG7997-PA | 417 | CG7997-PA | 24..413 | 18..404 | 1320 | 61.8 | Plus |
| CG7997-PB | 417 | CG7997-PB | 24..413 | 18..404 | 1320 | 61.8 | Plus |
