BS25729.complete Sequence
1517 bp assembled on 2011-08-02
GenBank Submission: KX803897
> BS25729.complete
GAAGTTATCAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACC
ATCATCCGCTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCG
CATCCGCACTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTT
GCCGCCACAATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGG
GAGCGATAAACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCC
AAGCCAGATGTCTTTCCCTCAGAGGAGCTGCCCGACTCTCTGGTGATGCG
GCGACCACGTCGCACCCGCACCACTTTTACCAGCTCTCAAATAGCAGAGC
TGGAGCAGCACTTTCTGCAGGGACGATACCTCACAGCCCCCCGACTTGCG
GATCTGTCAGCGAAACTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTT
TAAGAACCGTCGGCGTCGTCACAAGATCCAATCGGATCAGCACAAGGACC
AGTCCTACGAGGGGATGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGC
GATCCCCCCAGCTTGCAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAA
CGCTTTGACTCCGTCACCCACGCCCTCAACGCCCACTGCACACATGACGG
AGCACTACAGCGAGTCATTCAACGCCTACTACAACTACAATGGAGGCCAC
AATCACGCCCAGGCCAATCGTCACATGCACATGCAGTATCCTTCCGGAGG
GGGGCCAGGACCTGGGTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGC
AGCAGCAGGTCCATAATCACCAGCAGCAACTGCACCACCAGGGCAACCAC
GTGCCGCACCAGATGCAGCAGCAGCAACAGCAGGCTCAGCAGCAGCAATA
CCATCACTTTGACTTCCAGCAAAAGCAAGCCAGCGCCTGTCGCGTCCTGG
TCAAGGACGAACCGGAGGCCGACTACAACTTCAACAGCTCGTACTACATG
CGATCGGGAATGTCTGGCGCCACTGCATCGGCATCCGCTGTGGCCCGAGG
CGCTGCCTCGCCGGGCTCCGAGGTCTACGAGCCATTAACACCCAAGAATG
ACGAAAGTCCGAGTCTGTGTGGCATCGGCATCGGCGGACCTTGCGCCATC
GCCGTTGGCGAGACGGAGGCGGCCGACGACATGGACGACGGAACGAGCAA
GAAGACGACGCTACAGATCTTGGAGCCTTTGAAGGGTCTGGACAAGAGCT
GCGACGATGGCAGTAGCGACGACATGAGCACCGGAATAAGAGCCTTAGCA
GGAACCGGAAATCGTGGAGCGGCATTTGCCAAATTTGGCAAGCCTTCGCC
CCCACAAGGCCCTCAGCCGCCCCTCGGAATGGGGGGCGTGGCCATGGGCG
AATCGAACCAATATCAATGCACGATGGATACGATAATGCAAGCGTATAAT
CCCCATCGGAACGCCGCGGGCAACTCGCAGTTTGCCTACTGCTTCAATTA
GAAGCTTTCTAGACCAT
BS25729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 1485 | CG1034-PG | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| bcd-RD | 1470 | CG1034-PD | 1..1470 | 17..1501 | 7165 | 99 | Plus |
| bcd-RE | 1257 | CG1034-PE | 1..1257 | 245..1501 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 2514 | CG1034-RG | 196..1680 | 17..1501 | 7425 | 100 | Plus |
| bcd-RE | 2536 | CG1034-RE | 196..1702 | 17..1501 | 7170 | 98.5 | Plus |
| bcd-RD | 2499 | CG1034-RD | 196..1665 | 17..1501 | 7165 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757473..6758434 | 1216..255 | 4810 | 100 | Minus |
| 3L | 28110227 | 3L | 27540974..27541647 | 255..928 | 3310 | 99.4 | Plus |
| 3L | 28110227 | 3L | 27850063..27850736 | 255..928 | 3310 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6756676..6756962 | 1501..1215 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 6759107..6759271 | 181..17 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 17..178 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 17..178 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758472..6758548 | 257..181 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 27540860..27540936 | 181..257 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 27849949..27850025 | 181..257 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 797..994 | 279 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 797..906 | 233 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 797..906 | 233 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 797..927 | 227 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 797..928 | 225 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 772..927 | 197 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 797..906 | 183 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 797..988 | 182 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 797..921 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 797..929 | 160 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 796..906 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 797..931 | 146 | 60.3 | Plus |
BS25729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:45 Download gff for
BS25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 207..1691 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:11 Download gff for
BS25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1680 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:31 Download gff for
BS25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1680 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:31 Download gff for
BS25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6756676..6756960 | 1217..1501 | 100 | <- | Minus |
| 3R | 6757473..6758431 | 258..1216 | 100 | <- | Minus |
| 3R | 6758472..6758547 | 182..257 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:11 Download gff for
BS25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2582398..2582682 | 1217..1501 | 100 | <- | Minus |
| arm_3R | 2583195..2584153 | 258..1216 | 100 | <- | Minus |
| arm_3R | 2584194..2584269 | 182..257 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 17..181 | 100 | | Minus |
BS25729.pep Sequence
Translation from 16 to 1500
> BS25729.pep
MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFR
NPFDLLFDERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRRPRRT
RTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR
RHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPS
PTPSTPTAHMTEHYSESFNAYYNYNGGHNHAQANRHMHMQYPSGGGPGPG
STNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDF
QQKQASACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAASPG
SEVYEPLTPKNDESPSLCGIGIGGPCAIAVGETEAADDMDDGTSKKTTLQ
ILEPLKGLDKSCDDGSSDDMSTGIRALAGTGNRGAAFAKFGKPSPPQGPQ
PPLGMGGVAMGESNQYQCTMDTIMQAYNPHRNAAGNSQFAYCFN*
BS25729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-PG | 494 | CG1034-PG | 1..494 | 1..494 | 2716 | 100 | Plus |
| bcd-PD | 489 | CG1034-PD | 1..489 | 1..494 | 2673 | 99 | Plus |
| bcd-PE | 418 | CG1034-PE | 1..418 | 77..494 | 2248 | 100 | Plus |
| bcd-PF | 413 | CG1034-PF | 1..413 | 77..494 | 2205 | 98.8 | Plus |
| bcd-PA | 149 | CG1034-PA | 56..149 | 401..494 | 510 | 100 | Plus |
