BS25732.complete Sequence
1637 bp assembled on 2011-08-30
GenBank Submission: KX803948
> BS25732.complete
GAAGTTATCAGTCGACATGCCCTTCGTCCAGCGCGTGGTGCAGCCCGTCA
ATGTGGCCCAGGCCACGGCGGCCAGTTTGGGCCACGCATCCGGACGATTC
CACTGCACGCCGGGCAAGTGCCGGAACAACAACTGCATTAACAAGCAGTC
GCCGGATGTAGAGGTCCCCAATGGCCACGGATCACCCACATCCCTTACCA
GGGTTCTGGTTCACCAGGCGCCGGAGGATCAACCCGTACCGCCCGCTCCG
GCACCCATGAAGAAGCTAAAGCACCACGTCGAGTTCCTGTCCACCTCGCC
CACTCGCCATCAGTCGCAATCCCTGCCCAATTCGCGGCATCCCAGCCAGC
AGAGGCCGGCGCTTGGAAGGATCGCCAGTGCACCGCAGTCGCCCACTGCC
GGCTCCTCCAAGGTGGTCTCCGGCCACGAGTTCGACTCGATCAGCAACAT
AACGCTGAGCAACGCCCTGCGGCAGCTGGCCAGCTTGGTCCTCATAGCCA
GCGATATCTTCGACGACCTGCAGCGGGATCTGCAGGCGGTGGGCGAGCGG
GCGGGTCGTGTGCAGCGGAAGATTGCCGCCGTGGAGCGACGCGTCTGTGC
CTACGATCCGAAAACGGTCACAGTTCCTGAAAGCGACCTGCTCACCTTCG
CACAGCGCAAACACCACTTCGAGACGGACAAGTCATTCCAGCAGGAGCTC
TTTACAGGCGAGACCAGACCTCTGAGCGTCCGGCAGCTTTACACGGAGGC
TGGTAAGGAGCTGCCGGTGGCCACCGGAGCCACTGCGACTGCCCTCGCCT
CCTTGGCGCACTCGCAGTCGCTGATCCCGTCCCGTTCCATCTCCTTCAAC
GGTGAGGTTCTGTCCAGCGATCACGAAGTTCTACAACTAAATGGATCCAC
GGACACGGAGGATCATCTGCTGTGCGTGTCGGACTTTGGCAATGCCAACC
GCAAGCTGCGCACGCGCATCGATGCCGAGATCGAGATCCGACTGCCCGCT
GCCATTGAGGATTTGCGGAAGTGGACGTCCAGCGAGGCGCTGGGTGATGT
CACCGTCACGCCGGATTGCATGCATCACGTGGACACCTCGGTGAGCACAT
CGCTGGCCATCGGCGAGAATGGCATCCTGACCCCGGCGCTGTCACCGTCC
GTCCTATCCGCCGATGCCGTCGATGCCCTCTACGCCCAGAATCTGAGCCA
GGCGGCGGACAGCTCCCGGCACAACCACCACACGCAAGCCCTCATCCCGA
ACGATATTAATAAAGACGTGCCTTTGAATCATCGATTGCCTTCACCCGAA
GAACAGACCAAGCAGATTGCCTTAAAATACCCCGCCGAAGTGATTTCGGT
GAACACCAGCGGTAAGCACTTCCAGCGGATGTGTGCGGCTCGCAAGTCGA
CCAGTGGAGGATACGCAGGTGGCGCCACCGCCGGATCCTCGAGCAGCACA
TCGCCGGAGAACGCCGGCCAAACGGAGGGCAACAACCTGGACGACAATGT
GCAGACGGTGAGCCGGAGGTCAAGATCGCGCAAGGTGCGCGGAAAGCGGC
GGAACACGATAGCCGGAATCGATCAGAAGGAGATCCAGGATGCGGCTAAT
GGGGTATCAACGTTTCTCTAAAAGCTTTCTAGACCAT
BS25732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gukh-RB | 1605 | CG31043-PB | 1..1605 | 17..1621 | 8010 | 99.9 | Plus |
| gukh-RE | 5295 | CG31043-PE | 1..1586 | 17..1602 | 7915 | 99.9 | Plus |
| gukh-RC | 3135 | CG31043-PC | 1..1586 | 17..1602 | 7915 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gukh-RB | 3575 | CG31043-RB | 482..2086 | 17..1621 | 8010 | 99.9 | Plus |
| gukh-RE | 6191 | CG31043-RE | 482..2067 | 17..1602 | 7915 | 99.9 | Plus |
| gukh-RC | 4011 | CG31043-RC | 482..2067 | 17..1602 | 7915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18984506..18985115 | 17..626 | 3035 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19008504..19008871 | 627..994 | 1840 | 100 | Plus |
| 3R | 32079331 | 3R | 19011560..19011892 | 994..1326 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 19013174..19013450 | 1327..1603 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:09:52 has no hits.
BS25732.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-30 18:36:38 Download gff for
BS25732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RB | 482..2084 | 17..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:46 Download gff for
BS25732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RB | 482..2084 | 17..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:48 Download gff for
BS25732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gukh-RB | 482..2084 | 17..1619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:48 Download gff for
BS25732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18984506..18985115 | 17..626 | 99 | -> | Plus |
| 3R | 19008504..19008871 | 627..994 | 100 | -> | Plus |
| 3R | 19011561..19011892 | 995..1326 | 100 | -> | Plus |
| 3R | 19013174..19013449 | 1327..1602 | 100 | -> | Plus |
| 3R | 19020929..19020945 | 1603..1619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:46 Download gff for
BS25732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14838896..14839171 | 1327..1602 | 100 | -> | Plus |
| arm_3R | 14846651..14846667 | 1603..1619 | 100 | | Plus |
| arm_3R | 14837283..14837614 | 995..1326 | 100 | -> | Plus |
| arm_3R | 14810228..14810837 | 17..626 | 99 | -> | Plus |
| arm_3R | 14834226..14834593 | 627..994 | 100 | -> | Plus |
BS25732.pep Sequence
Translation from 16 to 1620
> BS25732.pep
MPFVQRVVQPVNVAQATAASLGHASGRFHCTPGKCRNNNCINKQSPDVEV
PNGHGSPTSLTRVLVHQAPEDQPVPPAPAPMKKLKHHVEFLSTSPTRHQS
QSLPNSRHPSQQRPALGRIASAPQSPTAGSSKVVSGHEFDSISNITLSNA
LRQLASLVLIASDIFDDLQRDLQAVGERAGRVQRKIAAVERRVCAYDPKT
VTVPESDLLTFAQRKHHFETDKSFQQELFTGETRPLSVRQLYTEAGKELP
VATGATATALASLAHSQSLIPSRSISFNGEVLSSDHEVLQLNGSTDTEDH
LLCVSDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEALGDVTVTPD
CMHHVDTSVSTSLAIGENGILTPALSPSVLSADAVDALYAQNLSQAADSS
RHNHHTQALIPNDINKDVPLNHRLPSPEEQTKQIALKYPAEVISVNTSGK
HFQRMCAARKSTSGGYAGGATAGSSSSTSPENAGQTEGNNLDDNVQTVSR
RSRSRKVRGKRRNTIAGIDQKEIQDAANGVSTFL*
BS25732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gukh-PB | 534 | CG31043-PB | 1..534 | 1..534 | 2724 | 100 | Plus |
| gukh-PC | 1044 | CG31043-PC | 1..530 | 1..530 | 2702 | 99.8 | Plus |
| gukh-PE | 1764 | CG31043-PE | 1..529 | 1..529 | 2701 | 100 | Plus |
| gukh-PA | 1788 | CG31043-PA | 1..529 | 1..529 | 2701 | 100 | Plus |
| SCAR-PA | 613 | CG4636-PA | 27..136 | 138..251 | 170 | 33.3 | Plus |
