BS25749.complete Sequence
2369 bp assembled on 2011-08-31
GenBank Submission: KX800225
> BS25749.complete
GAAGTTATCAGTCGACATGGCCGCCACCGATGGCCAAATCATATTGGCCG
CCTCCCGATTCGGCGATGCCACGCCCGTTTACCTGCGCGACTTTTCCAAG
CAGCCGCTGCCGGCGGTGGCCAAGATCATCAAGGGCCAGCACCAGGCGCT
GGGGGTGCCCACATTGTCGGCCCCATCTCTGCAGAGCACCGCCCTATTTC
TGAGCGCCGGCAAGAAGTACCAGATCCTGGCCCAGCCCATCAAGATCAAG
GAGGGTCGCAAGCCCACCAATGTGGGCGCCAAGGTGCTCATCCCGGAGAC
CTACGGCGGCTACTTCGAGCTCCTCAGCGAGGATGGTCGCTCCACGCGAT
GCATTGACTCCGTGCTGGAGCTCTCGCGACGGCGAAACGCCCGCGTCCTG
GTGCGGGAGACCTTTCGATGCCAGCAGATGAACCGGACTATCCACGCCGG
CGAACTGCTGACCACCATGAACGACAACGGGAAGTACCTGCAGTGCAGGA
ACATCAAGGACGAGATCATCAATCTGCCACTCGATACCAAAGCCAAGTTC
TCGCCGATCGCCAGGGAGGACAGCATCAGCGGTGTCCACACCGTCAAGAA
TCTGCTGCTCAAGCGGATGCCAGTCATCGTGAGACTCGTTCACGGCAGTG
CGCCCAAGGGTCTGAAACAGCCATTTGTGCCCGAACTGCGACTGCTGGGC
TGCGTGGAGATCGACAGGATATTCGCGTTGCCACTGCAAAAGGACACGGA
TCTGGTGCCGGTGCCGCTGAATGCCAAGATCAAGCTGCAGCGAGCCAAGA
ACATGGAGCAACTGGAGCACTTCATCGAGTACTCGCGATTCCTGGACAAG
GCGCAGCGATTGCTGGCCGATGCACGCGATCGCCTGCAGATCGTCGATCT
CAAGCTGAGCGAGAAGGAGAAGAAAGACTCCAAGTTCAATAGTCGCAATG
GGGGCAGGTTGCCGGTGGTCATGCTGCCATCTGCAGCGGGAATGGCCAGT
GGACTGGCGGAAAGTGGTTATGTGCTGCGCAAGAGTGCCAGTTGTGATTC
GTGGTCGAAGCAACAGCAGCAGGCACTGAGCAGCAGCGAGATTGCGGAGG
AGTACAACGAGATCGATCATATATATGATTATGTGAGGGGCCTGACGCCG
CTCTCGAAGGGATTGGCCCGCTTCGAGCCCATCTGCGAATCACCCACTCT
GCGGTCCCATCACACGGACAGCGGCAGTGGCAACTATTGCAGTTTGATCA
GGGCTCCGGTTCACCAGCAGGCCACCACCTCCGGCAACAACAACTACAGC
AGCTTGGAGTCGAACAAGCACAGCAGTAGCGGCGGTGGCCATCATCCCGG
TAGCCACCATCACCACCATCATCACGTGGTTAATCACTACCATCATGGCC
ATATTCAGGAGGACATCAAGCCGGTGCCGCCGCCCATTGAAACGATTCCG
GGCAAGAAGCCGGCGGAGAAGCGCCAGCGTCCCACTCTACCAAAGCTTTA
CATCAAGAATGCCCACAGTGCTGGGAGCAGCAGCAATGGCAACTCCACGG
GCACCACCCACAGCACCAGTCACAGTCACAGCCATAGTCACAGTCACGTC
CACAGTCACAGTCACGGGCAGTCACAGTCGCAGCAGCAGCCGCCGACACC
CAATGGGAATACGGGCAATGCGGTGGCCAATGCGGCCGCCTCAGCGGTCG
CAGCTGCTCATCACGGTTCCCACGGATCGCACGGATCACATCTGCACCCC
CATCCGCATGCCAGTGTGCATCCACATCCGCATCCTCATCACGGCAAGGT
GCTGACGCCCAACAATCATCTGCCGAGCAAGGAGGCTCTCGAGCCGCAGT
CGCCTCTGTTTCACATCAGGTACAAGAGTCTTAGCAGTCTGCAGCTGACG
CCGGACAACAACAATTGCTCCTCTGTGACGCCGCCGACGATCTCAGCCCA
CGGCAAGTCATCAGGAGCAGGCGTTGGATCGGGAGCAACTGCGTCGGGCA
CACCGGGCACGCCGGGCACTCCACCGGATGTGGGGCTCAAGTGCGGCAGC
ATACTGAACGTGCACGGTTACCTGTCCAGTCCGCATCCTCTGCCATTGCC
GCTGCCCCACAGCCGGAGTTCCAGTAGCAATAACCATCACAATCCGAGGG
AGGGTACGCTGGATTCATCCCGCAGCGGAGGCCGGACATCGGGCGACTCG
AACAAGCTGCCCGAGAAGAAGACACGCCGCCTGTCCCGGCCAAGAAGTCT
GTCCAACCTGGTCTGGGATCTGCGGCCCTCGAAGGAGAAGTCGAAGAAGA
AGCTCTACATCCATCATTTCGATCAGCGGCAGCAGGCGACGCTGTATCTG
TAGAAGCTTTCTAGACCAT
BS25749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sano-RF | 2736 | CG12758-PF | 396..2736 | 13..2353 | 11690 | 100 | Plus |
| sano-RE | 2337 | CG12758-PE | 1..2337 | 17..2353 | 11670 | 100 | Plus |
| sano-RD | 2337 | CG12758-PD | 1..2337 | 17..2353 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sano-RF | 4279 | CG12758-RF | 799..3139 | 13..2353 | 11690 | 100 | Plus |
| sano-RE | 4614 | CG12758-RE | 1134..3474 | 13..2353 | 11690 | 100 | Plus |
| sano-RD | 4279 | CG12758-RD | 799..3139 | 13..2353 | 11690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18956255..18957495 | 632..1872 | 6205 | 100 | Plus |
| 2R | 25286936 | 2R | 18955506..18956126 | 13..633 | 3090 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18957716..18958203 | 1866..2353 | 2440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6863 | 1503..1650 | 174 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6907 | 1526..1664 | 162 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2503 | 1219..1374 | 155 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6923 | 1526..1643 | 148 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6860 | 1526..1640 | 146 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6937 | 1526..1664 | 130 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2399..2549 | 1212..1368 | 123 | 58.1 | Plus |
BS25749.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:29 Download gff for
BS25749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1050..3386 | 17..2353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:55 Download gff for
BS25749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1037..3373 | 17..2353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:11 Download gff for
BS25749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RD | 803..3139 | 17..2353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:11 Download gff for
BS25749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18955510..18956126 | 17..633 | 99 | -> | Plus |
| 2R | 18956257..18957492 | 634..1869 | 100 | -> | Plus |
| 2R | 18957720..18958203 | 1870..2353 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:55 Download gff for
BS25749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14843015..14843631 | 17..633 | 99 | -> | Plus |
| arm_2R | 14843762..14844997 | 634..1869 | 100 | -> | Plus |
| arm_2R | 14845225..14845708 | 1870..2353 | 100 | | Plus |
BS25749.pep Sequence
Translation from 16 to 2352
> BS25749.pep
MAATDGQIILAASRFGDATPVYLRDFSKQPLPAVAKIIKGQHQALGVPTL
SAPSLQSTALFLSAGKKYQILAQPIKIKEGRKPTNVGAKVLIPETYGGYF
ELLSEDGRSTRCIDSVLELSRRRNARVLVRETFRCQQMNRTIHAGELLTT
MNDNGKYLQCRNIKDEIINLPLDTKAKFSPIAREDSISGVHTVKNLLLKR
MPVIVRLVHGSAPKGLKQPFVPELRLLGCVEIDRIFALPLQKDTDLVPVP
LNAKIKLQRAKNMEQLEHFIEYSRFLDKAQRLLADARDRLQIVDLKLSEK
EKKDSKFNSRNGGRLPVVMLPSAAGMASGLAESGYVLRKSASCDSWSKQQ
QQALSSSEIAEEYNEIDHIYDYVRGLTPLSKGLARFEPICESPTLRSHHT
DSGSGNYCSLIRAPVHQQATTSGNNNYSSLESNKHSSSGGGHHPGSHHHH
HHHVVNHYHHGHIQEDIKPVPPPIETIPGKKPAEKRQRPTLPKLYIKNAH
SAGSSSNGNSTGTTHSTSHSHSHSHSHVHSHSHGQSQSQQQPPTPNGNTG
NAVANAAASAVAAAHHGSHGSHGSHLHPHPHASVHPHPHPHHGKVLTPNN
HLPSKEALEPQSPLFHIRYKSLSSLQLTPDNNNCSSVTPPTISAHGKSSG
AGVGSGATASGTPGTPGTPPDVGLKCGSILNVHGYLSSPHPLPLPLPHSR
SSSSNNHHNPREGTLDSSRSGGRTSGDSNKLPEKKTRRLSRPRSLSNLVW
DLRPSKEKSKKKLYIHHFDQRQQATLYL*
BS25749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sano-PF | 911 | CG12758-PF | 134..911 | 1..778 | 4106 | 100 | Plus |
| sano-PE | 778 | CG12758-PE | 1..778 | 1..778 | 4106 | 100 | Plus |
| sano-PD | 778 | CG12758-PD | 1..778 | 1..778 | 4106 | 100 | Plus |
| sano-PC | 778 | CG12758-PC | 1..778 | 1..778 | 4106 | 100 | Plus |
| sano-PA | 778 | CG12758-PA | 1..778 | 1..778 | 4106 | 100 | Plus |
