BS25754.complete Sequence
2669 bp assembled on 2011-08-31
GenBank Submission: KX802814
> BS25754.complete
GAAGTTATCAGTCGACATGAAGCGGCGCTGGTCGAACAACGGCGGCTTCA
TGCGCCTACCGGAGGAGTCGTCCTCGGAGGTCACGTCCTCCTCGAACGGG
CTCGTCCTGCCCTCGGGGGTGAACATGTCGCCCTCGTCGCTGGACTCGCA
CGACTATTGCGATCAGGACCTTTGGCTCTGCGGCAACGAGTCCGGTTCGT
TTGGCGGCTCCAACGGCCATGGCCTAAGTCAGCAGCAGCAGAGCGTCATC
ACGCTGGCCATGCACGGGTGCTCCAGCACTCTGCCCGCGCAGACAACCAT
CATTCCGATCAACGGCAACGCGAATGGGAATGGAGGCTCCACCAATGGCC
AATATGTGCCGGGTGCCACTAATCTGGGAGCGTTGGCCAACGGGATGCTC
AATGGGGGCTTCAATGGAATGCAGCAACAGATTCAGAATGGCCACGGCCT
CATCAACTCCACAACGCCCTCAACGCCGACCACCCCGCTCCACCTTCAGC
AGAACCTGGGGGGCGCGGGCGGCGGCGGTATCGGGGGAATGGGTATTCTT
CACCACGCGAATGGCACCCCAAATGGCCTTATCGGAGTTGTGGGAGGCGG
CGGCGGAGTAGGTCTTGGAGTAGGCGGAGGCGGAGTGGGAGGCCTGGGAA
TGCAGCACACACCCCGAAGCGATTCGGTGAATTCTATATCTTCAGGTCGC
GATGATCTCTCGCCTTCGAGCAGCTTGAACGGATACTCGGCGAACGAAAG
CTGCGATGCGAAGAAGAGCAAGAAGGGACCTGCGCCACGGGTGCAAGAGG
AGCTGTGCCTGGTTTGCGGCGACAGGGCCTCCGGCTACCACTACAACGCC
CTCACCTGTGAGGGCTGCAAGGGGTTCTTTCGACGCAGCGTTACGAAGAG
CGCCGTCTACTGCTGCAAGTTCGGGCGCGCCTGCGAAATGGACATGTACA
TGAGGCGAAAGTGTCAGGAGTGCCGCCTGAAAAAGTGCCTGGCCGTGGGT
ATGCGGCCGGAATGCGTCGTCCCGGAGAACCAATGTGCGATGAAGCGGCG
CGAAAAGAAGGCCCAGAAGGAGAAGGACAAAATGACCACTTCGCCGAGCT
CTCAGCATGGCGGCAATGGCAGCTTGGCCTCTGGTGGCGGCCAAGACTTT
GTTAAGAAGGAGATTCTTGACCTTATGACATGCGAGCCGCCCCAGCATGC
CACTATTCCGCTACTACCTGATGAAATATTGGCCAAGTGTCAAGCGCGCA
ATATACCTTCCTTAACGTACAATCAGTTGGCCGTTATATACAAGTTAATT
TGGTACCAGGATGGCTATGAGCAGCCATCTGAAGAGGATCTCAGGCGTAT
AATGAGTCAACCCGATGAGAACGAGAGCCAAACGGACGTCAGCTTTCGGC
ATATAACCGAGATAACCATACTCACGGTCCAGTTGATTGTTGAGTTTGCT
AAAGGTCTACCAGCGTTTACAAAGATACCCCAGGAGGACCAGATCACGTT
ACTAAAGGCCTGCTCGTCGGAGGTGATGATGCTGCGTATGGCACGACGCT
ATGACCACAGCTCGGACTCAATATTCTTCGCGAATAATAGATCATATACG
CGGGATTCTTACAAAATGGCCGGAATGGCTGATAACATTGAAGACCTGCT
GCATTTCTGCCGCCAAATGTTCTCGATGAAGGTGGACAACGTCGAATACG
CGCTTCTCACTGCCATTGTGATCTTCTCGGACCGGCCGGGCCTGGAGAAG
GCCCAACTAGTCGAAGCGATCCAGAGCTACTACATCGACACGCTACGCAT
TTATATACTCAACCGCCACTGCGGCGACTCAATGAGCCTCGTCTTCTACG
CAAAGCTGCTCTCGATCCTCACCGAGCTGCGTACGCTGGGCAACCAGAAC
GCCGAGATGTGTTTCTCACTAAAGCTCAAAAACCGCAAACTGCCCAAGTT
CCTCGAGGAGATCTGGGACGTTCATGCCATCCCGCCATCGGTCCAGTCGC
ACCTTCAGATTACCCAGGAGGAGAACGAGCGTCTCGAGCGGGCTGAGCGT
ATGCGGGCATCGGTTGGGGGCGCCATTACCGCCGGCATTGATTGCGACTC
TGCCTCCACTTCGGCGGCGGCAGCCGCGGCCCAGCATCAGCCTCAGCCTC
AGCCCCAGCCCCAACCCTCCTCCCTGACCCAGAACGATTCCCAGCACCAG
ACACAGCCGCAGCTACAACCTCAGCTACCACCTCAGCTGCAAGGTCAACT
GCAACCCCAGCTCCAACCACAGCTTCAGACGCAACTCCAGCCACAGATTC
AACCACAGCCACAGCTCCTTCCCGTCTCCGCTCCCGTGCCCGCCTCCGTA
ACCGCACCTGGTTCCTTGTCCGCGGTCAGTACGAGCAGCGAATACATGGG
CGGAAGTGCGGCCATAGGACCCATCACGCCGGCAACCACCAGCAGTATCA
CGGCTGCCGTTACCGCTAGCTCCACCACATCAGCGGTACCGATGGGCAAC
GGAGTTGGAGTCGGTGTTGGGGTGGGCGGCAACGTCAGCATGTATGCGAA
CGCCCAGACGGCGATGGCCTTGATGGGTGTAGCCCTGCATTCGCACCAAG
AGCAGCTTATCGGGGGAGTGGCGGTTAAGTCGGAGCACTCGACGACTGCA
TAGAAGCTTTCTAGACCAT
BS25754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EcR-RG | 2637 | CG1765-PG | 1..2637 | 17..2653 | 13185 | 100 | Plus |
| EcR-RB | 2637 | CG1765-PB | 1..2637 | 17..2653 | 13185 | 100 | Plus |
| EcR-RE | 2550 | CG1765-PE | 590..2550 | 693..2653 | 9805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EcR-RG | 8415 | CG1765-RG | 1064..3700 | 17..2653 | 13185 | 100 | Plus |
| EcR-RB | 4092 | CG1765-RB | 1145..3781 | 17..2653 | 13185 | 100 | Plus |
| EcR-RE | 5233 | CG1765-RE | 1104..3064 | 693..2653 | 9805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6092588..6093735 | 2653..1506 | 5740 | 100 | Minus |
| 2R | 25286936 | 2R | 6122880..6123560 | 697..17 | 3405 | 100 | Minus |
| 2R | 25286936 | 2R | 6094557..6095074 | 1210..693 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 6093796..6093950 | 1508..1354 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 6094010..6094154 | 1354..1210 | 725 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2277..2545 | 2042..2319 | 206 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2545 | 2109..2274 | 164 | 57.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3345 | 2195..2318 | 130 | 58.1 | Plus |
| Rt1b | 5171 | Rt1b RT1B 5150bp | 2272..2306 | 1140..1106 | 121 | 82.9 | Minus |
BS25754.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:35 Download gff for
BS25754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EcR-RG | 1069..3705 | 17..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:37 Download gff for
BS25754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EcR-RB | 1145..3781 | 17..2653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:39 Download gff for
BS25754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EcR-RB | 1145..3781 | 17..2653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:39 Download gff for
BS25754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6094010..6094153 | 1211..1354 | 100 | <- | Minus |
| 2R | 6092588..6093733 | 1508..2653 | 100 | <- | Minus |
| 2R | 6093797..6093949 | 1355..1507 | 100 | <- | Minus |
| 2R | 6094557..6095071 | 696..1210 | 100 | <- | Minus |
| 2R | 6122882..6123560 | 17..695 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:37 Download gff for
BS25754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1981515..1981658 | 1211..1354 | 100 | <- | Minus |
| arm_2R | 1980093..1981238 | 1508..2653 | 100 | <- | Minus |
| arm_2R | 1981302..1981454 | 1355..1507 | 100 | <- | Minus |
| arm_2R | 1982062..1982576 | 696..1210 | 100 | <- | Minus |
| arm_2R | 2010387..2011065 | 17..695 | 100 | | Minus |
BS25754.pep Sequence
Translation from 16 to 2652
> BS25754.pep
MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQ
DLWLCGNESGSFGGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPING
NANGNGGSTNGQYVPGATNLGALANGMLNGGFNGMQQQIQNGHGLINSTT
PSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGL
GVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKK
SKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCC
KFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQ
KEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL
PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD
ENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS
SEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQ
MFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR
HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIW
DVHAIPPSVQSHLQITQEENERLERAERMRASVGGAITAGIDCDSASTSA
AAAAAQHQPQPQPQPQPSSLTQNDSQHQTQPQLQPQLPPQLQGQLQPQLQ
PQLQTQLQPQIQPQPQLLPVSAPVPASVTAPGSLSAVSTSSEYMGGSAAI
GPITPATTSSITAAVTASSTTSAVPMGNGVGVGVGVGGNVSMYANAQTAM
ALMGVALHSHQEQLIGGVAVKSEHSTTA*
BS25754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EcR-PG | 878 | CG1765-PG | 1..878 | 1..878 | 4579 | 100 | Plus |
| EcR-PB | 878 | CG1765-PB | 1..878 | 1..878 | 4579 | 100 | Plus |
| EcR-PE | 849 | CG1765-PE | 197..849 | 226..878 | 3373 | 99.8 | Plus |
| EcR-PD | 849 | CG1765-PD | 197..849 | 226..878 | 3373 | 99.8 | Plus |
| EcR-PA | 849 | CG1765-PA | 197..849 | 226..878 | 3373 | 99.8 | Plus |
