BS25757.complete Sequence
3026 bp assembled on 2011-08-31
GenBank Submission: KX805093
> BS25757.complete
GAAGTTATCAGTCGACATGGCTATGGCTGAGTTTGTTTTTTGCCGGCCAT
TGTTTGGGCTCGCCATTGTTCTCCTGGTGGCGCCAATTGATGCCGCCCAG
AGGCACACTGCCTCGGATAATCCCTCGACGTACAACATTGGCGGCGTACT
GAGCAATTCCGACAGCGAGGAGCACTTTAGCACCACAATAAAGCACCTCA
ACTTCGATCAGCAGTATGTGCCGCGGAAGGTCACCTACTACGACAAAACC
ATCCGCATGGACAAGAATCCCATCAAGACGGTCTTCAATGTGTGCGACAA
GCTCATCGAGAATCGGGTGTACGCCGTAGTCGTTTCGCATGAGCAAACCT
CAGGTGATTTGTCGCCGGCGGCCGTGAGTTATACAAGCGGATTCTATTCA
ATTCCCGTCATTGGCATCTCCTCGCGGGACGCGGCCTTCTCCGACAAGAA
CATCCACGTCTCCTTCCTGCGGACGGTGCCGCCGTACTACCACCAGGCGG
ATGTCTGGCTGGAGATGCTCAGCCACTTTGCCTACACGAAGGTAATCATC
ATCCACAGCTCCGACACGGATGGCCGGGCCATCCTGGGTCGCTTCCAGAC
GACATCGCAGACTTACTACGACGACGTGGATGTGCGCGCCACCGTGGAGC
TGATTGTCGAGTTCGAGCCCAAGCTGGAGAGCTTCACCGAGCACCTCATC
GACATGAAGACCGCCCAGTCCAGGGTCTACCTCATGTACGCGAGCACGGA
AGACGCTCAAGTAATCTTCCGCGATGCCGGGGAGTACAACATGACCGGTG
AGGGTCACGTGTGGATTGTAACGGAGCAGGCGCTGTTCTCCAACAACACT
CCGGACGGAGTACTGGGTCTCCAGCTGGAGCACGCCCATAGTGACAAGGG
GCACATCAGGGACAGCGTTTATGTTTTGGCGTCGGCCATCAAGGAGATGA
TTTCCAACGAGACCATTGCCGAGGCTCCCAAGGATTGCGGCGATTCGGCC
GTTAACTGGGAATCGGGCAAGCGACTGTTTCAGTACCTCAAAAGCCGTAA
TATCACCGGCGAAACGGGTCAGGTGGCCTTCGATGACAATGGTGACCGAA
TCTACGCCGGCTACGATGTGATCAACATTCGGGAGCAGCAGAAGAAGCAC
GTGGTTGGAAAGTTCAGCTACGACAGCATGCGGGCCAAAATGCGGATGAG
GATCAACGACAGCGAGATCATTTGGCCGGGAAAGCAGCGCCGCAAGCCCG
AGGGCATCATGATTCCCACCCACCTGAGGCTGCTCACCATCGAGGAGAAG
CCCTTCGTCTACGTGCGGCGCATGGGCGACGATGAGTTCCGCTGTGAGCC
GGATGAGCGTCCGTGTCCGCTGTTCAACAACTCGGATGCCACGGCCAACG
AGTTCTGCTGCCGCGGCTACTGCATCGACCTGCTGATCGAACTGTCCAAA
CGGATCAACTTCACCTACGACCTGGCCCTCTCGCCGGATGGTCAGTTTGG
GCACTACATCCTTCGGAACAACACGGGAGCGATGACGTTGCGCAAGGAGT
GGACGGGCCTCATCGGGGAGCTGGTCAACGAACGTGCCGACATGATCGTG
GCACCACTAACCATCAATCCGGAGCGTGCCGAGTACATTGAATTCTCGAA
GCCATTCAAATACCAAGGCATTACAATACTCGAGAAGAAACCGTCACGAT
CGAGTACTCTCGTGTCTTTCTTGCAGCCGTTTAGTAACACGCTATGGATC
TTGGTAATGGTGTCGGTCCATGTTGTGGCGCTCGTGCTCTACCTGCTGGA
CAGATTCTCGCCGTTCGGACGCTTCAAGCTCTCGCACTCGGACAGCAACG
AGGAGAAGGCCCTCAATCTCAGCTCCGCGGTGTGGTTCGCCTGGGGAGTC
CTGCTGAACAGCGGGATCGGCGAGGGCACGCCCCGGAGCTTCTCCGCCCG
GGTGCTGGGCATGGTCTGGGCCGGATTTGCTATGATCATCGTTGCCTCGT
ACACCGCCAACCTGGCCGCCTTCCTCGTGCTGGAGCGGCCCAAGACCAAG
TTGAGCGGCATCAACGACGCCCGCTTGCGGAACACCATGGAGAACCTGAC
CTGCGCCACCGTCAAGGGCTCCTCCGTGGACATGTACTTCCGTCGCCAGG
TGGAGCTCTCCAACATGTATCGCACCATGGAGGCGAACAACTACGCCACC
GCCGAGCAGGCCATCCAGGATGTGAAGAAGGGCAAGCTTATGGCCTTCAT
CTGGGATTCATCTCGGCTGGAGTACGAGGCCTCCAAGGATTGCGAACTAG
TTACAGCCGGAGAGCTGTTCGGACGAAGTGGGTACGGGATTGGACTGCAA
AAGGGCTCGCCCTGGACGGATGCGGTCACGCTGGCCATCTTGGAGTTCCA
CGAAAGCGGTTTCATGGAAAAATTGGACAAACAGTGGATCTTTCACGGAC
ACGTCCAGCAGAACTGCGAGCTGTTCGAGAAGACGCCCAACACTCTTGGG
CTTAAAAACATGGCGGGAGTGTTCATACTGGTGGGTGTGGGCATTGCCGG
CGGCGTGGGCCTGATCATCATCGAGGTCATCTACAAGAAGCACCAGGTGA
AGAAGCAGAAGCGCCTGGACATTGCCCGACATGCGGCGGACAAGTGGCGG
GGCACCATAGAGAAACGAAAGACTATTCGTGCCTCGCTGGCGATGCAGCG
ACAGTACAACGTGGGGCTGAACTCCACCCATGCCCCGGGCACCATCAGTC
TGGCAGTGGACAAGCGCCGGTATCCTCGCCTCGGTCAGCGACTGGGACCG
GAGAGAGCCTGGCCAGGAGACGCCGCCGACGTTCTGCGCATCCGTCGGCC
CTACGAACTGGGCAATCCTGGCCAGAGTCCGAAGGTGATGGCTGCCAACC
AGCCGGGAATGCCCATGCCCATGCTGGGCAAGACACGGCCCCAACAGAGT
GTCCTGCCACCTCGCTACTCGCCCGGATACACCAGCGACGTGTCGCATCT
GGTCGTCTAAAAGCTTTCTAGACCAT
BS25757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdar1-RA | 2994 | CG2902-PA | 1..2994 | 17..3010 | 14970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdar1-RA | 4170 | CG2902-RA | 240..3234 | 16..3010 | 14975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5511381..5511812 | 2232..1801 | 2160 | 100 | Minus |
| 3R | 32079331 | 3R | 5509778..5510127 | 3010..2661 | 1750 | 100 | Minus |
| 3R | 32079331 | 3R | 5510187..5510443 | 2662..2406 | 1285 | 100 | Minus |
| 3R | 32079331 | 3R | 5514421..5514649 | 544..316 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 5512572..5512788 | 1394..1178 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 5512015..5512227 | 1803..1591 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 5514104..5514308 | 744..540 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 5512295..5512491 | 1590..1394 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5516212..5516389 | 193..16 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 5510496..5510670 | 2406..2232 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 5513250..5513418 | 911..743 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5512856..5513017 | 1177..1016 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 5516016..5516142 | 318..192 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 5513079..5513186 | 1017..910 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:22:03 has no hits.
BS25757.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:37 Download gff for
BS25757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 237..3228 | 17..3008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:07 Download gff for
BS25757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 241..3232 | 17..3008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:59 Download gff for
BS25757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 241..3232 | 17..3008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:59 Download gff for
BS25757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5516018..5516140 | 194..316 | 100 | <- | Minus |
| 3R | 5516212..5516388 | 17..193 | 100 | | Minus |
| 3R | 5512572..5512788 | 1178..1394 | 100 | <- | Minus |
| 3R | 5512856..5513016 | 1017..1177 | 100 | <- | Minus |
| 3R | 5513080..5513185 | 911..1016 | 100 | <- | Minus |
| 3R | 5513251..5513416 | 745..910 | 100 | <- | Minus |
| 3R | 5514104..5514306 | 542..744 | 100 | <- | Minus |
| 3R | 5514424..5514648 | 317..541 | 100 | <- | Minus |
| 3R | 5509780..5510125 | 2663..3008 | 100 | <- | Minus |
| 3R | 5510187..5510443 | 2406..2662 | 100 | <- | Minus |
| 3R | 5510497..5510669 | 2233..2405 | 100 | <- | Minus |
| 3R | 5511381..5511809 | 1804..2232 | 100 | <- | Minus |
| 3R | 5512015..5512227 | 1591..1803 | 100 | <- | Minus |
| 3R | 5512295..5512490 | 1395..1590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:07 Download gff for
BS25757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1341740..1341862 | 194..316 | 100 | <- | Minus |
| arm_3R | 1341934..1342110 | 17..193 | 100 | | Minus |
| arm_3R | 1338294..1338510 | 1178..1394 | 100 | <- | Minus |
| arm_3R | 1338578..1338738 | 1017..1177 | 100 | <- | Minus |
| arm_3R | 1338802..1338907 | 911..1016 | 100 | <- | Minus |
| arm_3R | 1338973..1339138 | 745..910 | 100 | <- | Minus |
| arm_3R | 1339826..1340028 | 542..744 | 100 | <- | Minus |
| arm_3R | 1340146..1340370 | 317..541 | 100 | <- | Minus |
| arm_3R | 1335502..1335847 | 2663..3008 | 100 | <- | Minus |
| arm_3R | 1335909..1336165 | 2406..2662 | 100 | <- | Minus |
| arm_3R | 1336219..1336391 | 2233..2405 | 100 | <- | Minus |
| arm_3R | 1337103..1337531 | 1804..2232 | 100 | <- | Minus |
| arm_3R | 1337737..1337949 | 1591..1803 | 100 | <- | Minus |
| arm_3R | 1338017..1338212 | 1395..1590 | 100 | <- | Minus |
BS25757.pep Sequence
Translation from 16 to 3009
> BS25757.pep
MAMAEFVFCRPLFGLAIVLLVAPIDAAQRHTASDNPSTYNIGGVLSNSDS
EEHFSTTIKHLNFDQQYVPRKVTYYDKTIRMDKNPIKTVFNVCDKLIENR
VYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIHVSF
LRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTY
YDDVDVRATVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVI
FRDAGEYNMTGEGHVWIVTEQALFSNNTPDGVLGLQLEHAHSDKGHIRDS
VYVLASAIKEMISNETIAEAPKDCGDSAVNWESGKRLFQYLKSRNITGET
GQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYDSMRAKMRMRINDSE
IIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPC
PLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILR
NNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQ
GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF
GRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMV
WAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVK
GSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDSSR
LEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFM
EKLDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVFILVGVGIAGGVGLI
IIEVIYKKHQVKKQKRLDIARHAADKWRGTIEKRKTIRASLAMQRQYNVG
LNSTHAPGTISLAVDKRRYPRLGQRLGPERAWPGDAADVLRIRRPYELGN
PGQSPKVMAANQPGMPMPMLGKTRPQQSVLPPRYSPGYTSDVSHLVV*
BS25757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdar1-PA | 997 | CG2902-PA | 1..997 | 1..997 | 5196 | 100 | Plus |
| Nmdar2-PF | 1070 | CG33513-PF | 137..960 | 56..868 | 731 | 24.7 | Plus |
| Nmdar2-PG | 1082 | CG33513-PG | 137..960 | 56..868 | 731 | 24.7 | Plus |
| Nmdar2-PC | 1083 | CG33513-PC | 137..960 | 56..868 | 731 | 24.7 | Plus |
| Nmdar2-PE | 941 | CG33513-PE | 25..818 | 92..868 | 721 | 25 | Plus |
