BS25758.complete Sequence
3167 bp assembled on 2011-08-31
GenBank Submission: KX804104
> BS25758.complete
GAAGTTATCAGTCGACATGTCGAAACGGAGCGCCGACGACGCCACCGGCA
GCAGCTGCTTGGTGGCCGCCGCAGCCGCCGGCCAGCCGCCCATCAAGAAG
GTGCACTTCGAGCCCCATCTGATTGGGCCGGTGTCCACGCTGGAGGAGAT
GGACATCAAGGTGCTGGAATTCCAGAACAAGAAGCTAGCACAGCGCATCG
AACAGCGGATGCGAACGGAGGCGGAGCTGCGACATCGAATCGAGCAGCTG
GAAAAGCGGCAAACGCAGGACGACGCCGTTCTAAACGTGGTCAATCGGTA
TTGGAATCAGCTGAACGAGGACATACGAGTCCTGCTGCAGCGCTTCGATG
CCGAGACGGCCGACGAACTGGAGAACCGGAATGAGAACGAGGTGACCACC
TCGTTTCTCGCCCAACTGTCCACCTGGGACAAGGAGGAGCTGGACGAGAA
GCTGGCCAACCGCGTCCAAGTGTCCAAAAGGGCGGTCGCCAAGATCGTAC
AGGTTATTGATAGGTTAATGCAACGCAATGAAAAGATAACTCATGTCTTG
AAAGGTGATAGTCTGGCTTCAGCTGGCTCCGGTTCAGGAGCGGGAGCTGG
CGGCGAGGAGGAGCAGCAGCAGGCCAGCGGCGATGCGGAGACCACAACGT
CATCGGCCGGTGTCCATGCGCTAGAGGAAACCCTGAAGCAAACGCACATC
GAGATCATGAGCGAAAATCACAAGCTGCAGAATCTGAATACCTCGCTGCA
CGAGAAGTTCCACACCATGTCGCTGAAGATGAAGGAGTACCAGGACGCTC
ATACCGCCAAGGAGACGGAGAACGCCGAACTGAAGAACCAGATAGACGAA
CTGCAATATGACCTAGAGAAGATCCATTGCCGGAATGATAAGCTGGAGAA
CCACTTGGCCGAGGCTATTGAAAAGCTGAAGGCCTACCACCAGATTTACG
GTGATCCCAATAAGAGCACTAATAGTGCCAAGACACCAACTACCACAGGC
AGCGGCGGCGCCACCACCAGCGTTAATAGCCAGCTATTGGAGGAGCTGCA
AAAGGAGCTGGAGGAGTACCGCGAACTGGCCAACAACCGACTGCAGGAGC
TGGATAAGCTTCACGCCACGCATCGCGAAACCCTGAAGGAGGTGGAGAAG
CTTAAAATGGATATACGACAGTTGCCGGAATCGGTAATTGTGGAAACCAC
GGAGTACAAGTGCCTGCAGAGCCAGTTTTCCGTGCTCTACAACGAGTCCA
TGCAGATAAAGACCATGCTGGACGAGACCCGAAACCAGCTTCAAACGAGC
AAGAACCAGCATCTGCGACAAATCGAAGTGATGGAGAGCGAGGAACTTAT
TGCCCAGAAGAAGGTGCGCAGCGAGATGATCCAGATGGAGGACGTTTTAG
CCCTCATCCGAAAGGAGTACGAAACGCTACGCATTGAGTTCGAGCAGAAC
ATGGCAGCCAACGAGCAGACGGCACCCATCAATCGCGAGATGCGCCACCT
GATCACCTCTCTACAAAACCACAATGGCCAACTGAAGGGTGAGGTGCAGC
GCTACAAGCGAAAGTACAAGGACACGTCCACGGACAACTTGAAGCTGCGT
CAGGAGCTGGCGGATGCACTAGCTACACTCGAAGGCAACAAGTTGCAGGC
GGCGACTGGTGCGGCTGGCGAAGAAATCAAGCAGGAGAACTCAACAGGTG
TGAAGGAGGAGAACTCCAACAACGTTTCCGCCAGTGGACAAACAAACCAA
ACAAATTCCGGCAACGATACCAACGTAGCCATCAAGGAGGAGAACCATAT
CTCGGCTGAAGATGAAGCTGATGACGAGGCCAGTGGTAAGGACGTAAAAG
ACGGCATCAAGCAGGAGAAGCTCAGTTCTGGAGACGCGGCGGCAGCTGAG
AAGAAGGATTCCCCTGGACCCGGAAACTCAACAAGTTCTGCGACCAATTC
TGTTCCCGTCAAAAACGAAAAGGATTCCAAGGATGGTGTCAAGGGCAAGG
ATGTGAAGGCAGTGGAAAGTGAAACGGTGCGCGATCTGAAGGCGCAACTA
AAAAAAGCACTGAACGACCAGAAAGAAATGAAACTCCTGCTGGATATGTA
CAAAGGCGTATCGAAGGATCAGCGCGACAAGGTCCAGTTGATGGCCACCG
AAAAGAAACTGCGCTCCGAGATCGAGGAGCTCCGCCAGCAGCTGAAGAAG
CTGCAGGAAAGCAAGCGCGAGGAACGCAAGAAGCTGGCCGACGAGGAGGC
GTTACGTAAGATTAAGCAATTGGAGGAGCAGAAGTACGAGCTGCAAAAAC
AGATGGCCAACCACAAGCCAACGGATAATTCTTGGGGCAGTGGAGCCCCC
GGCACAGCGAACTACACGCGACCGTTTGTTGGTTCCCACGAAGAGGAGGC
ACTGCTGAACGAGATGGAGGTTACCGGCCAGGCGTTCGAGGACATGCAGG
AGCAGAACTCCCGGCTCATACAACAGCTGCGTGAGAAGGACGATGCGAAC
TTTAAGCTAATGTCGGAGCGCATCAAGGCCAACCAGCTGCACAAACTTCT
GAGAGAGGAAAAGACGGTGCTGGAGGATCAGATGGCAACGGCGACCACGC
AAATCGAAGCCATGCACATTGTGCTGCGAAAGCTGGAGGAGAAGGAACGC
AGCCTGCAGGCCACCGTCGCGTCGATTGAGAAAGAGTTGATGCTGCGGCA
GCAAGCAATGGAGATGCACAAACGCAAGGCGATTGAATCGGCGCAATCGG
CAGCGGACCTCAAGCTGCATCTGGAAAAGTATCACGCGCAAATGAAGGAG
GCGCAGCAAGTGGTGGCGGAGAAGACCAGTTCGCTGGAGGCGGAGGCCTA
CAAGACCAAGCGGCTGCAGGAGGAGCTGGCGCAGTTTAAACGCAAGGCGG
AGCGCATGAAGAAGATGGAAATGTCGGGCACCACCATCGACGAGGTGATG
ATTGAGGAGATCCGCGAATACAAAGAAACGCTCACGTGTCCCTCGTGCAA
GGTGAAGCGGAAGGATGCTGTCCTGTCAAAGTGTTTCCACGTCTTCTGCT
ACGACTGCCTGCGCACTAGATATGAAACGCGGCAGCGGAAGTGTCCCAAA
TGCAACTGCGCCTTCGGCGCCAACGATTATCATAGGCTATATCTGCAGTA
GAAGCTTTCTAGACCAT
BS25758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bre1-RB | 3135 | CG10542-PB | 1..3135 | 17..3151 | 15660 | 100 | Plus |
| Bre1-RA | 3135 | CG10542-PA | 1..3135 | 17..3151 | 15660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bre1-RB | 3993 | CG10542-RB | 145..3280 | 17..3152 | 15665 | 100 | Plus |
| Bre1-RA | 3632 | CG10542-RA | 145..3280 | 17..3152 | 15665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5792700..5793845 | 1162..17 | 5730 | 100 | Minus |
| 3L | 28110227 | 3L | 5790544..5791643 | 3152..2053 | 5500 | 100 | Minus |
| 3L | 28110227 | 3L | 5791696..5792585 | 2052..1163 | 4435 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:17:37 has no hits.
BS25758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:24 Download gff for
BS25758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bre1-RA | 144..3278 | 17..3151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:24 Download gff for
BS25758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bre1-RA | 145..3279 | 17..3151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:45 Download gff for
BS25758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bre1-RA | 145..3279 | 17..3151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:45 Download gff for
BS25758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5790545..5791643 | 2053..3151 | 100 | <- | Minus |
| 3L | 5791696..5792585 | 1163..2052 | 99 | <- | Minus |
| 3L | 5792700..5793845 | 17..1162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:24 Download gff for
BS25758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5783645..5784743 | 2053..3151 | 100 | <- | Minus |
| arm_3L | 5784796..5785685 | 1163..2052 | 99 | <- | Minus |
| arm_3L | 5785800..5786945 | 17..1162 | 100 | | Minus |
BS25758.pep Sequence
Translation from 16 to 3150
> BS25758.pep
MSKRSADDATGSSCLVAAAAAGQPPIKKVHFEPHLIGPVSTLEEMDIKVL
EFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVVNRYWNQLN
EDIRVLLQRFDAETADELENRNENEVTTSFLAQLSTWDKEELDEKLANRV
QVSKRAVAKIVQVIDRLMQRNEKITHVLKGDSLASAGSGSGAGAGGEEEQ
QQASGDAETTTSSAGVHALEETLKQTHIEIMSENHKLQNLNTSLHEKFHT
MSLKMKEYQDAHTAKETENAELKNQIDELQYDLEKIHCRNDKLENHLAEA
IEKLKAYHQIYGDPNKSTNSAKTPTTTGSGGATTSVNSQLLEELQKELEE
YRELANNRLQELDKLHATHRETLKEVEKLKMDIRQLPESVIVETTEYKCL
QSQFSVLYNESMQIKTMLDETRNQLQTSKNQHLRQIEVMESEELIAQKKV
RSEMIQMEDVLALIRKEYETLRIEFEQNMAANEQTAPINREMRHLITSLQ
NHNGQLKGEVQRYKRKYKDTSTDNLKLRQELADALATLEGNKLQAATGAA
GEEIKQENSTGVKEENSNNVSASGQTNQTNSGNDTNVAIKEENHISAEDE
ADDEASGKDVKDGIKQEKLSSGDAAAAEKKDSPGPGNSTSSATNSVPVKN
EKDSKDGVKGKDVKAVESETVRDLKAQLKKALNDQKEMKLLLDMYKGVSK
DQRDKVQLMATEKKLRSEIEELRQQLKKLQESKREERKKLADEEALRKIK
QLEEQKYELQKQMANHKPTDNSWGSGAPGTANYTRPFVGSHEEEALLNEM
EVTGQAFEDMQEQNSRLIQQLREKDDANFKLMSERIKANQLHKLLREEKT
VLEDQMATATTQIEAMHIVLRKLEEKERSLQATVASIEKELMLRQQAMEM
HKRKAIESAQSAADLKLHLEKYHAQMKEAQQVVAEKTSSLEAEAYKTKRL
QEELAQFKRKAERMKKMEMSGTTIDEVMIEEIREYKETLTCPSCKVKRKD
AVLSKCFHVFCYDCLRTRYETRQRKCPKCNCAFGANDYHRLYLQ*
BS25758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bre1-PB | 1044 | CG10542-PB | 1..1044 | 1..1044 | 5256 | 100 | Plus |
| Bre1-PA | 1044 | CG10542-PA | 1..1044 | 1..1044 | 5256 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 403..1356 | 43..966 | 292 | 19.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 406..1359 | 43..966 | 292 | 19.6 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 428..1381 | 43..966 | 292 | 19.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 268..1234 | 57..982 | 273 | 20.1 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 281..1231 | 71..982 | 264 | 19.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 717..1506 | 49..888 | 246 | 19.8 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 720..1509 | 49..888 | 246 | 19.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 531..1480 | 62..956 | 235 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 534..1483 | 62..956 | 235 | 20.3 | Plus |
