BS25762.complete Sequence
3743 bp assembled on 2011-08-31
GenBank Submission: KX806345
> BS25762.complete
GAAGTTATCAGTCGACATGAGCTGCTTTAGTGCGATGAGTGCCCCGCTGC
TGGGCGAGATGGAGCAGACCATTGGTATGCTGGAGCGCGGCACCATCGTG
ACCAAGTTGTATGGGAAACAGCGTCGTCCGGATCGCCGCCACCTGATGCT
CATACGAGAGACACGACAGCTGCTCTGGGCAACGGTGGCCACACAAACGC
CACGCACCGACTACGAGGGCGCCATACAGCTGCGGGAGATTCGCGAGATA
CGGGTGGGCAAGCACTCGAAGGAGTTTCGCCTGTTTGCCGACGACTGTCA
GCGCTTCGAGTCCAGCAAGTGCTTTGTCATACTGCACGGCAATCACTTCA
AGCTGAAGAGCTTCTCGGTGGTGGCTCTGTCGGAGATCGAGGCCGACAAT
TGGGTGCGGGGATTGCGTTACATGGTTAAGGACACACTGGGAGCACCCTA
TCCCTTGCAAATTGATCGCTGGCTGCGTCGCGAGTACTATCAAATCGAGA
ATGTTAACACGCATTCCGCCAAGGCCACGGAACAGTCGCCAGCCCAGGTG
ACCATTAAGGACTTTAAGCTCTTTTTGGCCGGAGTTAGCTGTAAGATGAC
CACCGGCAAGTTCATGGAGCACTTTACCGAGGATGTGCGGCGCAAGCACG
ATCTCAAGTTTGATGATTTCTCGCGGCTATATCAGAAGTTGCTGCTGCCC
AACGGATTTGCCAGCGTCTTGTCCGGATCGGGAGTGGCCAACTTTCCCTA
TTCGGAGGACCAACAGGTGGTGCGACCGGCGGAGCTGAAGCAGTTCCTCG
AGACGGAACAGCGCGATGTGAGCGCCAGTGAGATCAGTAGCGCAGCCATT
GCCTCCTTCATTCGGGACTTTGTTCAGGACGTGGAACGTGATGTTCAGGA
GCCGTATCTCACCTTCCCGGAGTTCGTCGACTTTCTGTTCTCCAAGCAAA
ACGACCTGTGGAACAGCAAGTACGACCAAGTGTTCATGGACATGAACCTG
CCGTTGTCCTCCTACTGGATCGCATCGTCGCACAATACCTACCTGACGGG
CGATCAGTTCTCCAGTGAATCCTCCTGCGAGGCCTACGCCCGCGCTCTTC
GCATGGGCTGCCGTTGCATCGAGTTGGATTGTTGGAACGGGCCCGACAAT
CTGCCCTACATATTTCACGGCCACACCATTACCTCCAAGATCAAGTTCAT
GGATGTCATCAAGACGATTAAGGATCATGCGTTCACCAGTTCCGAGTATC
CGGTAATATTGTCCATAGAGCAGAATTGCTCCCTGGAACAGCAGCGGAAT
ATGGCGCAGGCCTTGATCGAGGTTTTCGGGGATATGCTGCTTACGCAACC
TTGTGATCGAAACGAGCAGCACTTGCCATCGCCATACCAGTTGCGTCGCA
AGATAATCCTGAAGCACAAGAAGTTGCCGCAGTTTGACGACATCGCGAAT
GGGATTTCTAGCACGGGTTCACTGGGCCATAGATCATCGTTGGGCGGAGC
GGGCGGTGGAGCGCATGGGGAGAACGATGGCGAGAATGTGCGCAAGGTGT
TCAAGGAGGGACTGCTCTACTTCAAGGATCCGGTCGATAAGTCCTGGAAT
CTTTATCAGTTCGTTCTGACCCATCAGGAGCTAATCTACTCCTCTGAGAT
CAACGAGTCACGCAACGGAAACTCCGAGGATGATGACTTTGGGCTTTCTT
CGTCGTGCTCCCTAAACAGCAATATGCAGCAAAAGCAAAAGGATACCTCG
GCCAACGATGAGCTGCACTTCGGCGAGAATTGGTTCCATGGGAAACTTGA
AGGTGGCAGAAAGGAGGCTGATGATCTACTAAAGAAGTACAAACACTTTG
GCGATGGTACATTTTTGGTTCGGGAATCGGCCACGTTTGTGGGAGACTAT
AGCCTTTCGTTCTGGCGACGTAATCGCCCGAATCATTGCCGCATCAAGTT
AAAGCATGAAAATGGATCGATCAAGTACTATCTAGTGGAGAATTTTGTAT
TCGATTCACTGTACTCACTGATCGTTTATTATCGCAAGAATATGCTGCGT
AGCTCAGAGTTTTCGATTATACTGAAAGAGCCAGTTCCGCAGCCGAAAAA
GCACGAGGATCAGGAGTGGTTCCATCCGAACACCACCAAGGAGCAGGCCG
AACAGGGTCTATACCGGCTGGAAATTGGTTCGTTTCTAGTGCGGCCATCG
GTGCAGAGCATTAACGCTTTTGTCATTTCGTTCACAATCAATCGAAAGAT
CAAGCACTGTCGCATTATGCAGGAGGGACGCTTGTACGGCATCGATACAA
TGAACTTCGAGTCTCTGGTCTCGCTGATCAACTATTATACCCGAAATCCA
CTCTATCGCAATGTTAAGCTCAGCCATCCGGTGTCGCAGGAGCTGCTGCG
TCAGGCGCTAGCGGAGGCGGCACAGGGTGATCATAGTGGCGGTCACGATG
ACAACGGTGCCTCCAACTACATGGGCTCCAATCTGGAGGAGAATGTCACG
TGCAAGGCGCTCTACAGCTATAAGGCGAACAAGCCAGACGAACTCTCTTT
TCCCAAGCATGCCATCATAACGAATGTCCAGAGGGACAACTCGATGTGGT
GGATTGGAGATTATGGTGGCATGATCAAGAAGCATCTGCCGGCAAACTAC
GTTAAGGTTATCGATTCAACTACCGAGGACTACAATTCGCTGAACGAAGA
GGGCACGGATGGACGCACCGATTCCATTGAGATTTTCGGAGCTGTTGCCT
CGCTCTTTGAGTCCAACGATCCGGGGATTATTTTCAAGCTGCAGATACAA
ACGCCAACGATGCAGAATCCGTTTGTGATTGGCTTCGACAATCAGGAGAC
GGCGTACGAGTGGATAAAGGCAATCCAGGAGGCAGCCCTTATCGCCAGTC
AGCTGGCATCGGAGAGGCGGAAAAAGGAGCGCACTGCCCGGGTGGCCAAG
GAGATGTCCGATCTGATTATCTACTTCCGCAGCGTGCCGTTCCGCGAGCA
CTCGTGGATATTTCAGGAAATGTCGAGTTTCCCCGAAACGAAGGCCGAAA
AGCAGTTCTTCCAGCAGAACACACAACTGTTTCTCTCCTACCATCGCAAT
CAGATTAGCCGAGTGTATCCGAAGGGTCAGCGCTTGGACTCGTCGAATTT
TAATCCCATGCCATTCTGGAATGTTGGATCCCAGATGATCGCACTGAACT
ATCAGACAGGCGATAAGGCCATGCAGCTGAATCAGGCCAAGTTTCGGAAT
AATGGACAATGTGGCTATATCTTAAAGCCATCGTTCATGAAATCTGACAG
CTTCAATCCGAACAATCCGCTGTGCGATGGCCTAAGCGAAGTTAAAGTTA
GCATACGTCTGATAGCCGCACGTCATCTATTCCGGGGCGGCAAATCGAAC
AATCCGCAGATCGTGGTCGAATTGATTGGCGCTAGCTTTGATACGGGCGT
TAAGTATCGCACCAAAGTCAATGAAAATGGTTTCAATCCGGTGTGGAATG
AATCGTGCGAGTTTAACGTGCGTAATCCACAGTTTGCGATCCTTCGCTTC
GAAGTGCAGGACGAGGATATGTTCGCCGAGACGCACTTCATCGCCCAGGC
GTGCTATCCGCTGACCTGCATTCGCCAGGGCTATCGCAGCGTCATCCTAC
GAAATAAGTTCAGCGAGGAGCTGGAATTATCGTCCCTGCTGATCAACATT
AAGATAGCAAATGTTACCGCACCGTAAAAGCTTTCTAGACCAT
BS25762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sl-RA | 3711 | CG4200-PA | 1..3711 | 17..3727 | 18540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sl-RA | 5678 | CG4200-RA | 272..3982 | 17..3727 | 18540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16350586..16351892 | 17..1323 | 6535 | 100 | Plus |
| X | 23542271 | X | 16353714..16354786 | 2655..3727 | 5350 | 99.9 | Plus |
| X | 23542271 | X | 16352793..16353650 | 1801..2658 | 4290 | 100 | Plus |
| X | 23542271 | X | 16352247..16352732 | 1320..1805 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:22:28 has no hits.
BS25762.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:37 Download gff for
BS25762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sl-RA | 278..3986 | 17..3725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:18 Download gff for
BS25762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sl-RA | 272..3980 | 17..3725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:09 Download gff for
BS25762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sl-RA | 272..3980 | 17..3725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:09 Download gff for
BS25762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16350586..16351890 | 17..1321 | 100 | -> | Plus |
| X | 16352249..16352729 | 1322..1802 | 100 | -> | Plus |
| X | 16352795..16353648 | 1803..2656 | 100 | -> | Plus |
| X | 16353716..16354784 | 2657..3725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:18 Download gff for
BS25762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16244619..16245923 | 17..1321 | 100 | -> | Plus |
| arm_X | 16246282..16246762 | 1322..1802 | 100 | -> | Plus |
| arm_X | 16246828..16247681 | 1803..2656 | 100 | -> | Plus |
| arm_X | 16247749..16248817 | 2657..3725 | 99 | | Plus |
BS25762.pep Sequence
Translation from 16 to 3726
> BS25762.pep
MSCFSAMSAPLLGEMEQTIGMLERGTIVTKLYGKQRRPDRRHLMLIRETR
QLLWATVATQTPRTDYEGAIQLREIREIRVGKHSKEFRLFADDCQRFESS
KCFVILHGNHFKLKSFSVVALSEIEADNWVRGLRYMVKDTLGAPYPLQID
RWLRREYYQIENVNTHSAKATEQSPAQVTIKDFKLFLAGVSCKMTTGKFM
EHFTEDVRRKHDLKFDDFSRLYQKLLLPNGFASVLSGSGVANFPYSEDQQ
VVRPAELKQFLETEQRDVSASEISSAAIASFIRDFVQDVERDVQEPYLTF
PEFVDFLFSKQNDLWNSKYDQVFMDMNLPLSSYWIASSHNTYLTGDQFSS
ESSCEAYARALRMGCRCIELDCWNGPDNLPYIFHGHTITSKIKFMDVIKT
IKDHAFTSSEYPVILSIEQNCSLEQQRNMAQALIEVFGDMLLTQPCDRNE
QHLPSPYQLRRKIILKHKKLPQFDDIANGISSTGSLGHRSSLGGAGGGAH
GENDGENVRKVFKEGLLYFKDPVDKSWNLYQFVLTHQELIYSSEINESRN
GNSEDDDFGLSSSCSLNSNMQQKQKDTSANDELHFGENWFHGKLEGGRKE
ADDLLKKYKHFGDGTFLVRESATFVGDYSLSFWRRNRPNHCRIKLKHENG
SIKYYLVENFVFDSLYSLIVYYRKNMLRSSEFSIILKEPVPQPKKHEDQE
WFHPNTTKEQAEQGLYRLEIGSFLVRPSVQSINAFVISFTINRKIKHCRI
MQEGRLYGIDTMNFESLVSLINYYTRNPLYRNVKLSHPVSQELLRQALAE
AAQGDHSGGHDDNGASNYMGSNLEENVTCKALYSYKANKPDELSFPKHAI
ITNVQRDNSMWWIGDYGGMIKKHLPANYVKVIDSTTEDYNSLNEEGTDGR
TDSIEIFGAVASLFESNDPGIIFKLQIQTPTMQNPFVIGFDNQETAYEWI
KAIQEAALIASQLASERRKKERTARVAKEMSDLIIYFRSVPFREHSWIFQ
EMSSFPETKAEKQFFQQNTQLFLSYHRNQISRVYPKGQRLDSSNFNPMPF
WNVGSQMIALNYQTGDKAMQLNQAKFRNNGQCGYILKPSFMKSDSFNPNN
PLCDGLSEVKVSIRLIAARHLFRGGKSNNPQIVVELIGASFDTGVKYRTK
VNENGFNPVWNESCEFNVRNPQFAILRFEVQDEDMFAETHFIAQACYPLT
CIRQGYRSVILRNKFSEELELSSLLINIKIANVTAP*
BS25762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sl-PA | 1236 | CG4200-PA | 1..1236 | 1..1236 | 6505 | 100 | Plus |
| Plc21C-PH | 1306 | CG4574-PH | 209..467 | 214..469 | 419 | 39.4 | Plus |
| Plc21C-PC | 1311 | CG4574-PC | 209..467 | 214..469 | 419 | 39.4 | Plus |
| Plc21C-PB | 1312 | CG4574-PB | 209..467 | 214..469 | 419 | 39.4 | Plus |
| Plc21C-PA | 1312 | CG4574-PA | 209..467 | 214..469 | 419 | 39.4 | Plus |
| Plc21C-PH | 1306 | CG4574-PH | 588..854 | 969..1230 | 331 | 34.4 | Plus |
| Plc21C-PC | 1311 | CG4574-PC | 588..854 | 969..1230 | 331 | 34.4 | Plus |
| Plc21C-PB | 1312 | CG4574-PB | 588..854 | 969..1230 | 331 | 34.4 | Plus |
