BS25815.complete Sequence
1043 bp assembled on 2011-08-02
GenBank Submission: KX805356
> BS25815.complete
GAAGTTATCAGTCGACATGGAGAAGCTAACGAATGTTCAGGCACAGCAGG
AAGAGGAGGAGGAAGAAGGTCCACTCAGCGTGACTAAGTTAATAGGCGGC
AGCATCACGGCCAAGGACATCAAGCTGCTCCAGCAGGCCAGTCTGCACAC
CGTGGAGTCGGTGGCCAATGCCACCAAGAAGCAACTGATGGCCATTCCCG
GCTTGGGCGGCGGCAAGGTGGAGCAGATCATCACGGAGGCTAACAAACTG
GTGCCTCTGGGCTTCCTTAGTGCTCGCACCTTCTATCAAATGCGTGCCGA
TGTCGTGCAGCTGAGCACGGGCTCCAAGGAGCTGGATAAACTGCTGGGCG
GCGGCATTGAGACGGGATCCATTACCGAGATCTTTGGCGAGTTCCGCTGC
GGAAAGACCCAATTGTGCCACACTCTGGCAGTAACCTGCCAGCTGCCCAT
CAGCCAGAAGGGCGGCGAGGGCAAGTGCATGTACATCGACACGGAGAACA
CCTTCCGTCCGGAGCGTTTGGCTGCCATCGCGCAAAGGTACAAACTGAAT
GAATCCGAGGTGCTGGACAATGTGGCCTTCACCCGTGCCCACAACTCAGA
TCAGCAGACCAAGCTCATCCAGATGGCGGCGGGCATGCTCTTTGAGTCCA
GATACGCTTTGCTGATTGTGGACAGTGCCATGGCGCTCTACAGATCCGAT
TATATTGGTCGCGGGGAGCTGGCCGCCAGGCAAAACCATTTGGGCTTATT
TCTGCGCATGCTTCAACGCCTGGCCGATGAGTTCGGAGTGGCTGTGGTAA
TTACTAACCAGGTTACTGCCTCGCTGGACGGCGCACCCGGCATGTTTGAT
GCCAAGAAGCCCATTGGCGGGCACATCATGGCCCACTCCTCAACCACGCG
GCTGTATCTGCGCAAGGGTAAAGGCGAAACCCGCATCTGCAAGATCTACG
ACTCGCCCTGTTTGCCGGAATCGGAGGCCATGTTCGCCATTCTGCCGGAT
GGAATAGGAGACGCCAGGGAGAGCTAAAAGCTTTCTAGACCAT
BS25815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1011 | CG7948-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| spn-A-RB | 840 | CG7948-PB | 1..840 | 188..1027 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1279 | CG7948-RA | 99..1109 | 17..1027 | 5055 | 100 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 240..1172 | 95..1027 | 4665 | 100 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 99..177 | 17..95 | 395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30054866..30055798 | 1027..95 | 4665 | 100 | Minus |
| 3R | 32079331 | 3R | 30055861..30055939 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:00 has no hits.
BS25815.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:45 Download gff for
BS25815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 107..1115 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:16 Download gff for
BS25815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 99..1107 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:34 Download gff for
BS25815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 99..1107 | 17..1025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:34 Download gff for
BS25815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30054868..30055798 | 95..1025 | 100 | <- | Minus |
| 3R | 30055862..30055939 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:16 Download gff for
BS25815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25880590..25881520 | 95..1025 | 100 | <- | Minus |
| arm_3R | 25881584..25881661 | 17..94 | 100 | | Minus |
BS25815.pep Sequence
Translation from 16 to 1026
> BS25815.pep
MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA
NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS
TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG
EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL
IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ
RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK
GKGETRICKIYDSPCLPESEAMFAILPDGIGDARES*
BS25815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-PA | 336 | CG7948-PA | 1..336 | 1..336 | 1697 | 100 | Plus |
| spn-A-PB | 279 | CG7948-PB | 1..279 | 58..336 | 1424 | 100 | Plus |
| spn-B-PA | 341 | CG3325-PA | 87..328 | 98..335 | 185 | 30.9 | Plus |
| spn-D-PA | 270 | CG31069-PA | 45..267 | 98..309 | 171 | 27.8 | Plus |
