BS25843.complete Sequence
2189 bp assembled on 2011-11-14
GenBank Submission: KX804946
> BS25843.complete
GAAGTTATCAGTCGACATGGAATTGGCGATTTGTAAAACAGATCTGTCTG
CCACGAAATTTATGCTGCCGCCCGCTTTGCCCTCCTCAGCGGCCATTGGT
TCCTCGTCGGCGGTCGCCTCCACGGCCTCGCATTTCCTGGATAAGGCGGC
CCACGAGCTCTTTCAACTGAACGCCATCAACGGACACCTGTTCAAGTCGC
CGGCCAGCAGCCACCTCAATTCGGTCGGCAGTCCGTCGATACTTAGCCAA
TTGAACGGCATCGGCAACAGCGGCAACCATTCGGGCCAAGTTAGCACCAT
GAGGCTCAAGAAGAACCGCAAAGTCACCTTTCTGTCCAGCCTAGTTGAGT
CGAAAAATATTTTCATCAAGGAGGAGCCGATCCATGGATGCAAGGATCTG
TGCAGTTTGTCGGATATTTCAGATCATGAGGCATCATTAGAAGTTCCCAC
CGCCTTGCCACCCCTCACGCCGGGCACCAATCGCAAGGTCAACGAGGTAC
TGAAGGCATCCTTTGCCTCCTGGGAAAAGGAGGTCCAAAAATGCAACATA
ACCAAAGATCCGCGTGAATGGACGGAGGAGCATGTCATCTACTGGCTCAA
TTGGGCTAAAAATGAGTTCTCATTGGTCTCCATGAACCTGGACCCCTTCT
ACAAGATGAAGGGACGCGCCATGGTGGATCTGGGCAAGGAGAAGTTCCTG
GCCATCACGCCGCCCTTCACCGGCGACATACTGTGGGAGCACTTGGACAT
CCTGCAAAAAGATTGCGAGAAACCAAATGAGGATATTGTGCACGGCAATT
CCTTTGAGTCGGCCACCACGGCCTCGGTCTGTGGATCGGACCACCAGGTG
GCCAATTACCCCAACGAGACGCACGCCAACAGCAACAACAGCAGCATAAA
CAGCCGCCTGTCCATGGATTATGTGACGTCGGCGGGGAATAGTGATAATA
AAAACTTCCACCGCGCCACGCCCCACTCCCACAATGGCTACAACACCAGC
AACACACACGACCGCATCAACAACAGCACGCCCCCGCAGCAGCAGCAATC
GCAGCAGCCGACTGTCAATGGCAGCGGTAGCGCCAGCAGCAACAACAATA
ACTCCATGCTACCGCCCGCTGTACAGCAAAGCAACAACGAAAATAACAAC
ACCAGCAGCAGCAACACAAACAACAGCAGCAACAACAACAACAACAGCGG
TGGCAGCAACAATTCGAATGCGGGCAGCAATAACAACAATAATAACAACA
ATAATATTAACTTTATGGCAGCGGCGGCGATCTTCCAACATCACCTCAAA
GAGGAGCCGGGCACCCAGAATGGTAATATCGGTGGCTATGGTGGTGGCAG
TAATAGCCAGAACGATCCCACGGATCTCAGTAGTTATGGATTGCCCGCCC
ACCTGGCCGCTTACGGTGGTGGGAGTGGCAGTGGGCCAACCGGCGGCAGG
AGCTCCGGTGGCGGTGGCGATGAAAGCGATTATCACAGCACGATCTCGGC
GCAGGATCACCAGAGTCAGCAATCGAGTGGAGGAAATGGCAGTGGAGGAG
CCAGCGGTGGAAGCACCGGAAACAGCAACGGTTACTTGGACAGCAGCTCG
GAGTTCTATGGCAGTTACGCGGGCAGGAATCGATTCCACGATGGTTATCC
ACCGGAATTTACGCCCTATGATGCTCAATCCTTCCAGTCGATGGGCCCCC
AGCCCACGGCCATGGATCAGTGGGGAGCAGCCCATGCCCACCAGCATCCG
GCAGCGTATATGAGCACCTTGGGTCTGGATAAGGGCCTGCTGGGTGGCTA
TACGACGCAGGGCGGAGTGCCGTGCTTCACGGGATCGGGTCCCATTCAAC
TGTGGCAATTCCTGCTCGAATTGCTGCTGGACAAGACGTGTCAGAGTTTC
ATTTCGTGGACCGGCGATGGCTGGGAGTTCAAGCTAACAGATCCTGATGA
GGTGGCTCGTCGTTGGGGAATTCGCAAAAACAAACCGAAGATGAACTACG
AGAAGCTGAGTCGCGGTCTGCGCTACTATTATGACAAAAACATCATCCAC
AAGACGGCAGGCAAACGATATGTCTACCGCTTTGTCTGTGATCTCCAGAA
TCTAGTTGGGCACACACCCGAGGAGCTGGTGGCCAAGTATGATCTTAAGA
TTGAGAAAAAAGATGTGGATTAGAAGCTTTCTAGACCAT
BS25843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RB | 2157 | CG17077-PB | 1..2157 | 17..2173 | 10785 | 100 | Plus |
| pnt-RD | 1911 | CG17077-PD | 177..1911 | 439..2173 | 8675 | 100 | Plus |
| pnt-RE | 1878 | CG17077-PE | 691..1878 | 986..2173 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RB | 4074 | CG17077-RB | 784..2944 | 17..2177 | 10790 | 100 | Plus |
| pnt-RD | 2805 | CG17077-RD | 650..2388 | 439..2177 | 8680 | 99.9 | Plus |
| pnt-RE | 3715 | CG17077-RE | 1394..2585 | 986..2177 | 5945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23291715..23292682 | 1953..986 | 4840 | 100 | Minus |
| 3R | 32079331 | 3R | 23340182..23340514 | 349..17 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 23311981..23312208 | 987..760 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 23312887..23313092 | 761..556 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 23291495..23291660 | 2110..1945 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 23313442..23313560 | 557..439 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 23337896..23337988 | 440..348 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 23291361..23291429 | 2177..2109 | 330 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 07:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2543 | 988..1215 | 377 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2532 | 1051..1295 | 367 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2545 | 1021..1262 | 362 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2668 | 859..1214 | 332 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..6920 | 873..1261 | 324 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6923 | 989..1189 | 317 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6912 | 1020..1211 | 311 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2666 | 862..1191 | 308 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..3034 | 973..1232 | 304 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2973 | 992..1252 | 300 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2543 | 947..1167 | 292 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7005 | 979..1256 | 291 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6921 | 1038..1250 | 283 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..7112 | 858..1210 | 250 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..7028 | 947..1198 | 201 | 59.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1178 | 1065..1196 | 187 | 64 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..56 | 1226..1260 | 121 | 82.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7094 | 1226..1260 | 121 | 82.9 | Plus |
BS25843.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-14 09:53:49 Download gff for
BS25843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 779..2935 | 17..2173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:07 Download gff for
BS25843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 784..2940 | 17..2173 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:59 Download gff for
BS25843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 784..2940 | 17..2173 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:59 Download gff for
BS25843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23340182..23340514 | 17..349 | 100 | | Minus |
| 3R | 23291365..23291428 | 2110..2173 | 100 | <- | Minus |
| 3R | 23291496..23291653 | 1952..2109 | 100 | <- | Minus |
| 3R | 23291717..23292681 | 987..1951 | 100 | <- | Minus |
| 3R | 23311982..23312206 | 762..986 | 100 | <- | Minus |
| 3R | 23312887..23313090 | 558..761 | 100 | <- | Minus |
| 3R | 23313442..23313558 | 441..557 | 100 | <- | Minus |
| 3R | 23337896..23337986 | 350..440 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:07 Download gff for
BS25843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19117218..19117375 | 1952..2109 | 100 | <- | Minus |
| arm_3R | 19117087..19117150 | 2110..2173 | 100 | <- | Minus |
| arm_3R | 19117439..19118403 | 987..1951 | 100 | <- | Minus |
| arm_3R | 19137704..19137928 | 762..986 | 100 | <- | Minus |
| arm_3R | 19138609..19138812 | 558..761 | 100 | <- | Minus |
| arm_3R | 19139164..19139280 | 441..557 | 100 | <- | Minus |
| arm_3R | 19163618..19163708 | 350..440 | 100 | <- | Minus |
| arm_3R | 19165904..19166236 | 17..349 | 100 | | Minus |
BS25843.pep Sequence
Translation from 16 to 2172
> BS25843.pep
MELAICKTDLSATKFMLPPALPSSAAIGSSSAVASTASHFLDKAAHELFQ
LNAINGHLFKSPASSHLNSVGSPSILSQLNGIGNSGNHSGQVSTMRLKKN
RKVTFLSSLVESKNIFIKEEPIHGCKDLCSLSDISDHEASLEVPTALPPL
TPGTNRKVNEVLKASFASWEKEVQKCNITKDPREWTEEHVIYWLNWAKNE
FSLVSMNLDPFYKMKGRAMVDLGKEKFLAITPPFTGDILWEHLDILQKDC
EKPNEDIVHGNSFESATTASVCGSDHQVANYPNETHANSNNSSINSRLSM
DYVTSAGNSDNKNFHRATPHSHNGYNTSNTHDRINNSTPPQQQQSQQPTV
NGSGSASSNNNNSMLPPAVQQSNNENNNTSSSNTNNSSNNNNNSGGSNNS
NAGSNNNNNNNNNINFMAAAAIFQHHLKEEPGTQNGNIGGYGGGSNSQND
PTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGGGGDESDYHSTISAQDHQS
QQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYAGRNRFHDGYPPEFTP
YDAQSFQSMGPQPTAMDQWGAAHAHQHPAAYMSTLGLDKGLLGGYTTQGG
VPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRW
GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHT
PEELVAKYDLKIEKKDVD*
BS25843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-PB | 718 | CG17077-PB | 1..718 | 1..718 | 3847 | 100 | Plus |
| pnt-PD | 636 | CG17077-PD | 53..636 | 135..718 | 3144 | 99 | Plus |
| pnt-PC | 623 | CG17077-PC | 144..623 | 253..718 | 2153 | 85 | Plus |
| pnt-PE | 625 | CG17077-PE | 228..625 | 321..718 | 2151 | 99.5 | Plus |
| Ets65A-PA | 490 | CG7018-PA | 222..405 | 491..700 | 354 | 42.9 | Plus |
