BS25906.complete Sequence
449 bp assembled on 2011-08-02
GenBank Submission: KX805105
> BS25906.complete
GAAGTTATCAGTCGACATGTGCCAACAAGTCGTTGTCGTCGCCAACACCA
ACAACAAGATGAAGACCAGCTACAGCATCAAGCAGGTCCTGAAGACGCTC
TTCAAGAAGCAACAGAAGCAGCAGCAGAAGCCTCAGGGATCTCTGGAATC
GCTAGAATCCGTCGACAATCTGCGCAACGCCCAGGTTGAGGAGGCCTACT
ATGCCGAGATCGATGAGAACGCCGCCAACGAGAAGCTGGCCCAATTGGCT
CACTCTCAGGAGTTCGAGATTGTCGAGGAGCAGGAGGACGAGGAGGATGT
CTATGTCCCAGTTCGCTTCGCTCGCACCACCGCCGGCACCTTCTTCTGGA
CCACCAACCTTCAGCCAGTCGCCAGCGTTGAGCCCGCCATGTGCTACTCC
ATGCAATTCCAGGATCGTTGGGCCCAGGCTTAAAAGCTTTCTAGACCAT
BS25906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)malpha-BFM-RA | 417 | CG8337-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)malpha-BFM-RA | 676 | CG8337-RA | 71..487 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26010963..26011379 | 17..433 | 2085 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6883 | 43..136 | 131 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1101 | 104..135 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2389 | 103..156 | 105 | 68.5 | Plus |
BS25906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:22 Download gff for
BS25906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| malpha-RA | 71..485 | 17..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:38 Download gff for
BS25906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)malpha-BFM-RA | 71..485 | 17..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:51 Download gff for
BS25906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)malpha-BFM-RA | 71..485 | 17..431 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:51 Download gff for
BS25906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26010963..26011377 | 17..431 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:38 Download gff for
BS25906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21836685..21837099 | 17..431 | 100 | | Plus |
BS25906.pep Sequence
Translation from 16 to 432
> BS25906.pep
MCQQVVVVANTNNKMKTSYSIKQVLKTLFKKQQKQQQKPQGSLESLESVD
NLRNAQVEEAYYAEIDENAANEKLAQLAHSQEFEIVEEQEDEEDVYVPVR
FARTTAGTFFWTTNLQPVASVEPAMCYSMQFQDRWAQA*
BS25906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)malpha-BFM-PA | 138 | CG8337-PA | 1..138 | 1..138 | 706 | 100 | Plus |
| E(spl)m4-BFM-PA | 152 | CG6099-PA | 1..152 | 1..138 | 217 | 39.8 | Plus |
| Ocho-PB | 149 | CG3396-PB | 11..149 | 10..138 | 161 | 36.5 | Plus |
| Ocho-PC | 149 | CG3396-PC | 11..149 | 10..138 | 161 | 36.5 | Plus |
