BS25920.complete Sequence
887 bp assembled on 2011-08-02
GenBank Submission: KX806036
> BS25920.complete
GAAGTTATCAGTCGACATGGCTCACTTCAGTGGTCATCGCCAGCCGGCGA
CGGTGCCGTCCCATTTCAAGGATCTCTTCACCAATGGCCAGTTGGGTGCG
GCGGAGGAGAGCAACAATAATGACCAGAACGAGCAGGAGAATCGTCCCAG
TAACAATAACAATGCTGGACCTTCGGATCCCGCCTGCTGGGTCTTCGGTT
ACGGATCCTTGTGCTGGCATCCTGGCTTTAATTACACCAAGTGCATTACG
GGATATATTCGAGGATATGTTCGCCGCTTCTGGCAGGGCAACGTCACACA
TCGCGGCTGTGAAGAGAAGCCTGGACGTGTTGCAACGCTCGTTGAGGACA
AAGAGGGAATCACTTGGGGCTGCGCCTACAGAATAACAGGCAGCACGGCA
CTGGATTATCTCAAGCAGCGGGAGTGCACACTGGGTGGCTATGCAACAAT
CGATACCAAGTTCTTCCCGCGCGTCGCCTCGCAGGACACGCCCTTCAGCG
GCGAGGCGGTCGAGGTACTGGTCTATGTGGCGACGCCAGAGAATATCTAT
TGGTTGGGCGATGACCCGGTCGAGGAGATTGCCCAGCAGATCGTATCCTG
CCGCGGTCCCAGCGGACACAATGCCGAGTACCTGTTGCGCCTGGCCCTGT
TCATGCACGAGGAGATTCCCGGCGTGAGGGACGATCATCTGTTCGAGCTG
GAGCAATTGGTTTTAGAGGAACTGTACCGCCGCCAAATACCTCTGTCATC
TGTGATGGGCCGCAATCCAGATAGGATACGCCGCGACTCGCACGAGGACA
TCCGCCGCCCGCCATCCTTCGAGTTCACCTCCCGTGTGCCCGACACCAAG
CTGCGTTGCCTGAACATTTGAAAGCTTTCTAGACCAT
BS25920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10365-RD | 855 | CG10365-PD | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG10365-RA | 855 | CG10365-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG10365-RB | 855 | CG10365-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10365-RD | 1642 | CG10365-RD | 519..1373 | 17..871 | 4275 | 100 | Plus |
| CG10365-RA | 1427 | CG10365-RA | 304..1158 | 17..871 | 4275 | 100 | Plus |
| CG10365-RB | 1473 | CG10365-RB | 350..1204 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23730793..23731230 | 434..871 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 23728857..23729159 | 17..319 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 23730647..23730729 | 354..436 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 23729935..23729973 | 318..356 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:23:39 has no hits.
BS25920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:26 Download gff for
BS25920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RA | 262..1115 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:32 Download gff for
BS25920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 350..1203 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:40 Download gff for
BS25920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 350..1203 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:40 Download gff for
BS25920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23728857..23729159 | 17..319 | 100 | -> | Plus |
| 3R | 23729937..23729972 | 320..355 | 100 | -> | Plus |
| 3R | 23730649..23730727 | 356..434 | 100 | -> | Plus |
| 3R | 23730794..23731229 | 435..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:32 Download gff for
BS25920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19554579..19554881 | 17..319 | 100 | -> | Plus |
| arm_3R | 19555659..19555694 | 320..355 | 100 | -> | Plus |
| arm_3R | 19556371..19556449 | 356..434 | 100 | -> | Plus |
| arm_3R | 19556516..19556951 | 435..870 | 100 | | Plus |
BS25920.pep Sequence
Translation from 16 to 870
> BS25920.pep
MAHFSGHRQPATVPSHFKDLFTNGQLGAAEESNNNDQNEQENRPSNNNNA
GPSDPACWVFGYGSLCWHPGFNYTKCITGYIRGYVRRFWQGNVTHRGCEE
KPGRVATLVEDKEGITWGCAYRITGSTALDYLKQRECTLGGYATIDTKFF
PRVASQDTPFSGEAVEVLVYVATPENIYWLGDDPVEEIAQQIVSCRGPSG
HNAEYLLRLALFMHEEIPGVRDDHLFELEQLVLEELYRRQIPLSSVMGRN
PDRIRRDSHEDIRRPPSFEFTSRVPDTKLRCLNI*
BS25920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10365-PD | 284 | CG10365-PD | 1..284 | 1..284 | 1551 | 100 | Plus |
| CG10365-PA | 284 | CG10365-PA | 1..284 | 1..284 | 1551 | 100 | Plus |
| CG10365-PB | 284 | CG10365-PB | 1..284 | 1..284 | 1551 | 100 | Plus |
| CG10365-PC | 284 | CG10365-PC | 1..284 | 1..284 | 1551 | 100 | Plus |
| CG2540-PA | 311 | CG2540-PA | 60..244 | 46..228 | 303 | 40.9 | Plus |
