Clone BS25922 Report

Search the DGRC for BS25922

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:259
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptSip1-RA
Protein status:BS25922.pep: full length peptide match
Sequenced Size:923

Clone Sequence Records

BS25922.complete Sequence

923 bp assembled on 2011-09-14

GenBank Submission: KX801808

> BS25922.complete
GAAGTTATCAGTCGACATGTCCACGCCCACTTCCCCGAAGACGCCCACAC
CGCCCACTTTGCCACCGGGCGTGACCAAAACATGTCACATTGTGAAAAGG
CCCGATTTCGATGGCTATGGTTTCAATTTGCATTCGGAGAAGGTGAAACC
AGGACAGTTTATTGGCAAAGTAGATGCGGATTCTCCGGCAGAGGCAGCCG
GCCTGAAGGAGGGCGATCGCATCCTGGAGGTCAACGGGGTGTCCATTGGC
AGCGAGACCCACAAGCAGGTGGTTGCCAGGATCAAGGCCATTGCGAATGA
AGTCCGCTTGCTGCTCATCGATGTGGATGGCAAGGCCTTGGAGGTGAAAC
CGGCATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTGCCAGTCAG
AATGGATACGAGGGCACCAAACAGGAGATGCCCGGAGCAAGTGCCAATAT
CAGTAGCATCAGTATGGTGAGCACCAAGCGATCCTCAAATGCCAGCAGCA
TTCAGAGCGGCAGTACCATGAATGCCTCCGATTTGGATGTGGTCGATAGG
GGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCTCCCGTTCA
AAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTTGATGAGCA
CACCGCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACAATGGCAGT
GTTTATAACACCAATGGAAATGGTACAAATGGCATGACCACACCCACTAC
ACCACCCCCACCGACCAGTGGCTATAAGGCGGGCACCTTGCATTTACCAA
TGACGGCCGCCGAAATGCGCGCCAAATTGGCATCCAAGAAGAAGTACGAT
CCCAAGAACGAGAGTGTGGACCTCAAGAAGAAGTTCGACATCATTCAGAA
GCTCTGAAAGCTTTCTAGACCAT

BS25922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-RA 891 CG10939-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-RA 1717 CG10939-RA 436..1333 10..907 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17403890..17404787 10..907 4460 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:26:07 has no hits.

BS25922.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:32 Download gff for BS25922.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 440..1329 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:03 Download gff for BS25922.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 443..1332 17..906 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:33 Download gff for BS25922.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 443..1332 17..906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:33 Download gff for BS25922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17403897..17404786 17..906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:03 Download gff for BS25922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13291402..13292291 17..906 100   Plus

BS25922.pep Sequence

Translation from 16 to 906

> BS25922.pep
MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG
KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL
IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM
VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP
SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT
SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKL*

BS25922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-PA 296 CG10939-PA 1..296 1..296 1529 100 Plus