Clone BS25930 Report

Search the DGRC for BS25930

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:259
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptp38c-RA
Protein status:BS25930.pep: full length peptide match
Sequenced Size:1103

Clone Sequence Records

BS25930.complete Sequence

1103 bp assembled on 2011-08-02

GenBank Submission: KX805948

> BS25930.complete
GAAGTTATCAGTCGACATGCCGGAGTTCGTGAGAGTGGCAATTAACGAAA
GCCTTTGGGAGTTCCCGGATATATACGAGTTCGTTCGTTTTCTGGGTGGC
GGTTCCTTTGGCCAGGTGGCTAAGGTGAGACTACGAGGCACTGAAAATTA
CTTCGCTATGAAAAGGCTTATGCGCCCATTCGAGAGGGAGGAGGATGCTA
AGGGTACCTATCGCGAGATCCGTCTGCTGAAGCACATGAATCATCGAAAT
GTTATCAGCCTGCTGAACGTCTTCCATCCACCAGCGCACAACATGATGGA
ATTTCAGCAGGTTTATTTGGTGACTCACCTGATGGACGCGGATTTGCACA
GGTACTCGCGTTCGAAAAGGATGAGCGATCAAGAGATTAGGATAATCCTT
TACCAAATACTGCGGGGACTGAAGTACATACATAGTGCCGGGGTTGTTCA
TCGAGACTTAAAGCCCTGCAATATCGCAGTTAATGGAAATAGCGAGGTGC
GCATACTTGACTTCGGTTTATCCCGTATGTGCGCAGACAAAATGACGGAC
CATGTTGGAACTATGTGGTATCTAGCTCCGGAAATTATCTTTTTAAGGGG
TCAATACACAAAGGCAATTGACGTGTGGTCGGTTGGTTGCATTCTGGCGG
AACTTATCACGGATCGTGTCCTGTTTCGCGGTGAAAACTATGTAAGCCAA
ATACGATGTCTGATTAACATAATGGGTACTCCGACGAGGGAGTTTATCAC
CGGGATAAGCATGGAACGTTCGCGTAATTACCTGGAGGGGTACCCGTTAC
GACAAAGGTGCGATTTTCATCACCTGTTTATGGGTTACGATGTCCAGGCC
ATCGATTTGATGGAAAAAATGCTCGAAATGGTACCCGAAAAACGTATCAC
AGCTGCGGAAGCAATGCTCCATCCATACCTTCGGGATCTTATTGAGCCAC
ACCATCATGCCGAAGACACCGCACCAGTCTATGATCAGAACTTCGAAAAC
ATGGTACTGCCTGTAAAATGCTGGAAAGAACTTGTTTCCCACGAGATTCG
GAACTTCAGACCTGACCAACTTGATTTGCATTTTTAAAAGCTTTCTAGAC
CAT

BS25930.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-RA 1071 CG33338-PA 1..1071 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-RA 1184 CG33338-RA 22..1094 17..1089 5365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24149110..24150182 1089..17 5365 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:24:52 has no hits.

BS25930.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:30 Download gff for BS25930.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 22..1090 17..1085 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:14 Download gff for BS25930.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 22..1090 17..1085 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:15 Download gff for BS25930.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 22..1090 17..1085 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:15 Download gff for BS25930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24149114..24150182 17..1085 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:14 Download gff for BS25930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19974836..19975904 17..1085 100   Minus

BS25930.pep Sequence

Translation from 16 to 1086

> BS25930.pep
MPEFVRVAINESLWEFPDIYEFVRFLGGGSFGQVAKVRLRGTENYFAMKR
LMRPFEREEDAKGTYREIRLLKHMNHRNVISLLNVFHPPAHNMMEFQQVY
LVTHLMDADLHRYSRSKRMSDQEIRIILYQILRGLKYIHSAGVVHRDLKP
CNIAVNGNSEVRILDFGLSRMCADKMTDHVGTMWYLAPEIIFLRGQYTKA
IDVWSVGCILAELITDRVLFRGENYVSQIRCLINIMGTPTREFITGISME
RSRNYLEGYPLRQRCDFHHLFMGYDVQAIDLMEKMLEMVPEKRITAAEAM
LHPYLRDLIEPHHHAEDTAPVYDQNFENMVLPVKCWKELVSHEIRNFRPD
QLDLHF*

BS25930.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-PA 356 CG33338-PA 1..356 1..356 1893 100 Plus
p38a-PC 366 CG5475-PC 8..354 3..349 953 52.7 Plus
p38a-PB 366 CG5475-PB 8..354 3..349 953 52.7 Plus
p38a-PA 366 CG5475-PA 8..354 3..349 953 52.7 Plus
p38b-PA 365 CG7393-PA 5..353 1..349 941 50.7 Plus