BS25937.complete Sequence
1244 bp assembled on 2011-08-02
GenBank Submission: KX805215
> BS25937.complete
GAAGTTATCAGTCGACATGGATGACCGAAATGAGATACCTCAGGATGGCC
CCGCCAGCATGGAACCCGAGGGCGTCATCGAGTCCACCTGGCACGAGGTG
TACGACAACTTCGATGACATGAACTTGCGCGAGGAGTTGCTGCGCGGCAT
CTACGGTTATGGTTTCGAGAAGCCGTCGGCCATCCAGCAGCGCGCCATCA
TTCCCTGTGTGAGGGGTCGCGATGTCATTGCCCAGGCCCAGTCGGGAACT
GGCAAGACTGCCACCTTCTCGATTGCTATCCTTCAGCAAATCGACACGAG
CATTCGCGAGTGCCAGGCGCTGATCCTGGCCCCCACTCGCGAGTTGGCCA
CGCAGATCCAGCGCGTGGTGATGGCGCTCGGCGAGTACATGAAGGTGCAC
TCGCACGCCTGCATTGGCGGCACTAACGTGCGCGAAGACGCCCGCATCTT
GGAATCCGGTTGCCATGTGGTGGTGGGCACTCCTGGCCGCGTCTACGACA
TGATCAACCGCAAGGTGCTGCGCACCCAGTACATCAAGCTGTTCGTGCTG
GATGAGGCCGATGAGATGTTGTCCCGCGGTTTCAAGGATCAGATCCAGGA
TGTCTTCAAGATGCTGCCCCCAGATGTGCAGGTCATCCTGCTGTCCGCCA
CCATGCCGCCGGATGTGCTCGAAGTGAGCCGTTGCTTCATGCGTGATCCC
GTCAGCATCCTGGTTAAGAAGGAGGAACTGACCCTTGAGGGTATCAAGCA
GTTTTACGTCAACGTGAAGCAGGAGAACTGGAAACTGGGCACCCTTTGCG
ATCTGTACGATACGCTGTCCATCACCCAGTCGGTAATCTTCTGCAACACC
CGTCGCAAGGTGGACCAACTGACCCAGGAGATGTCTATCCACAACTTCAC
CGTCTCGGCCATGCACGGCGACATGGAGCAGCGTGATCGCGAGGTCATCA
TGAAACAATTCCGTTCGGGCTCGTCTCGTGTTCTGATTACCACTGATTTA
CTGGCGCGCGGTATTGATGTGCAGCAGGTGTCGTTGGTCATCAACTATGA
TCTGCCCTCGAACCGCGAGAACTACATTCATAGAATTGGTCGCGGTGGTC
GTTTCGGTCGCAAGGGTGTTGCGATCAACTTTATTACAGATGATGATCGA
CGAATCCTTAAGGATATTGAACAGTTCTACCACACAACAATTGAGGAAAT
GCCTGCTAATATTGCCGATTTGATTTAAAAGCTTTCTAGACCAT
BS25937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4a-RF | 1212 | CG9075-PF | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| eIF-4a-RE | 1212 | CG9075-PE | 1..1212 | 17..1228 | 6060 | 100 | Plus |
| eIF-4a-RD | 1212 | CG9075-PD | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4a-RF | 1939 | CG9075-RF | 227..1439 | 17..1229 | 6065 | 100 | Plus |
| eIF-4a-RE | 2021 | CG9075-RE | 71..1283 | 17..1229 | 6065 | 100 | Plus |
| eIF-4a-RD | 1960 | CG9075-RD | 458..1670 | 17..1229 | 6065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5984010..5984626 | 245..861 | 3085 | 100 | Plus |
| 2L | 23513712 | 2L | 5983010..5983237 | 19..246 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 5984717..5984942 | 858..1083 | 1130 | 100 | Plus |
| 2L | 23513712 | 2L | 5985024..5985171 | 1082..1229 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 8314210..8314617 | 725..1132 | 450 | 74 | Plus |
Blast to na_te.dros performed 2014-11-26 22:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 433..471 | 1187..1226 | 161 | 92.5 | Plus |
BS25937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:31 Download gff for
BS25937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RB | 297..1506 | 17..1226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:53 Download gff for
BS25937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 227..1436 | 17..1226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:53 Download gff for
BS25937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4a-RD | 458..1667 | 17..1226 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:53 Download gff for
BS25937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5983008..5983236 | 17..245 | 99 | -> | Plus |
| 2L | 5984011..5984624 | 246..859 | 100 | -> | Plus |
| 2L | 5984719..5984942 | 860..1083 | 100 | -> | Plus |
| 2L | 5985026..5985168 | 1084..1226 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:53 Download gff for
BS25937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5983008..5983236 | 17..245 | 99 | -> | Plus |
| arm_2L | 5984011..5984624 | 246..859 | 100 | -> | Plus |
| arm_2L | 5984719..5984942 | 860..1083 | 100 | -> | Plus |
| arm_2L | 5985026..5985168 | 1084..1226 | 100 | | Plus |
BS25937.pep Sequence
Translation from 16 to 1227
> BS25937.pep
MDDRNEIPQDGPASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGF
EKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQ
ALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCH
VVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKML
PPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNV
KQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMH
GDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNR
ENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIA
DLI*
BS25937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4a-PF | 403 | CG9075-PF | 1..403 | 1..403 | 2070 | 100 | Plus |
| eIF-4a-PE | 403 | CG9075-PE | 1..403 | 1..403 | 2070 | 100 | Plus |
| eIF-4a-PD | 403 | CG9075-PD | 1..403 | 1..403 | 2070 | 100 | Plus |
| eIF-4a-PB | 403 | CG9075-PB | 1..403 | 1..403 | 2070 | 100 | Plus |
| eIF-4a-PC | 403 | CG9075-PC | 1..403 | 1..403 | 2070 | 100 | Plus |
