BS25938.complete Sequence
1253 bp assembled on 2011-08-02
GenBank Submission: KX801272
> BS25938.complete
GAAGTTATCAGTCGACATGTCGGAGGCTGCCACGCCCCCAGGATCAGTGC
CAGGAACAGTATTCCCACCTGGCTTCGATCCCACTGCCGAATCGGTGGAG
AAGACTCTCTGCTTCCGGGGTTTCTGGGCCTGGGCCGTGCTGATATTCCT
GATTGTTCTGGGCATATTGCTCTTCATGTGGCTGCTGCGCAAGTGCATCC
AAGGACCGGCCTACCGGAAGGCCAATCGCATCGATGGCAAGGTGGTCATC
GTCACCGGCTGCAACACGGGCATTGGCAAGGAGACGGTCCTCGAGTTGGC
CAAGCGGGGTGCCCGCGTCTACATGGCCTGTCGGGATCCCGGTCGGTGTG
AGGCCGCACGACTGGATATCATGGATCGCAGTCGCAACCAGCAGCTCTTC
AATCGCACCCTGGATCTGGGCTCCCTGCAGTCGGTGAGAAATTTCGTGGA
GCGCTTCAAGGCGGAGGAATCCCGGCTGGATATACTGATCAATAATGCCG
GCGTTATGGCCTGTCCCAGGACCCTCACAGCCGATGGCTTTGAGCAGCAG
TTCGGTGTCAATCATCTGGGACACTTTTTGCTCACGAATCTGCTGCTGGA
TCGACTGAAGCACAGCTCGCCCAGTCGCATTGTGGTGGTCAGTTCGGCGG
CACATCTCTTTGGGCGAATCAACCGCGAGGATCTGATGAGCGAGAAGAAC
TACAGCAAGTTCTTTGGGGCGTACAGTCAGTCCAAGCTGGCCAACATCCT
GTTTACCCTCAAGCTGAGCACCATCCTTAAGGACACCGGCGTAACGGTGA
ACTGTTGTCATCCGGGTGTGGTCCGCACCGAGATCAACCGCCACTTTTCC
GGTCCCGGCTGGATGAAGACCGCCCTGCAGAAGGGCTCGCTGTACTTCTT
TAAGACACCCAAGGCTGGCGCCCAGACCCAGCTGAGATTGGCGCTGGATC
CGCAGTTGGAGGGCTCCACTGGTGGCTATTACTCGGACTGCATGCGCTGG
CCATTGTTTCCGTGGGTCCGGAATATGCAGACCGCCGACTGGTTGTGGCG
AGAGAGCGAGAAGCTGCTGGGTCTGCCACCGCTGGAGCCACCTCCACCTG
TCCAGAGCCCCACCCAGAATGGCAATGGCACTCAAAACGGCAATGGTAGT
TCCAGTGCCAGTGCCAGTGCCAGTAGTAACAATCCCGCTTCACGGGAAAT
GCAATCCGTGGAAACGGTCGTGGTCAATCGTTCGTAGAAGCTTTCTAGAC
CAT
BS25938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3842-RD | 1221 | CG3842-PD | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| CG3842-RC | 1221 | CG3842-PC | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| CG3842-RB | 1221 | CG3842-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3842-RD | 2655 | CG3842-RD | 1062..2282 | 17..1237 | 6105 | 100 | Plus |
| CG3842-RC | 2049 | CG3842-RC | 456..1676 | 17..1237 | 6105 | 100 | Plus |
| CG3842-RB | 1875 | CG3842-RB | 282..1502 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6342138..6343358 | 17..1237 | 6105 | 100 | Plus |
| 2R | 25286936 | 2R | 7664079..7664180 | 236..337 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:26:09 has no hits.
BS25938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-02 12:42:32 Download gff for
BS25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 331..1551 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:57 Download gff for
BS25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 282..1502 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:56 Download gff for
BS25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 282..1502 | 17..1237 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:56 Download gff for
BS25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6342138..6343358 | 17..1237 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:57 Download gff for
BS25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6236171..6237391 | 17..1237 | 100 | | Plus |
BS25938.pep Sequence
Translation from 16 to 1236
> BS25938.pep
MSEAATPPGSVPGTVFPPGFDPTAESVEKTLCFRGFWAWAVLIFLIVLGI
LLFMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGAR
VYMACRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAE
ESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLKHS
SPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKL
STILKDTGVTVNCCHPGVVRTEINRHFSGPGWMKTALQKGSLYFFKTPKA
GAQTQLRLALDPQLEGSTGGYYSDCMRWPLFPWVRNMQTADWLWRESEKL
LGLPPLEPPPPVQSPTQNGNGTQNGNGSSSASASASSNNPASREMQSVET
VVVNRS*
BS25938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3842-PD | 406 | CG3842-PD | 1..406 | 1..406 | 2135 | 100 | Plus |
| CG3842-PC | 406 | CG3842-PC | 1..406 | 1..406 | 2135 | 100 | Plus |
| CG3842-PB | 406 | CG3842-PB | 1..406 | 1..406 | 2135 | 100 | Plus |
| CG3842-PA | 406 | CG3842-PA | 1..406 | 1..406 | 2135 | 100 | Plus |
| CG2064-PA | 330 | CG2064-PA | 23..327 | 54..357 | 802 | 55.2 | Plus |
