BS25940.complete Sequence
1334 bp assembled on 2011-08-25
GenBank Submission: KX804004
> BS25940.complete
GAAGTTATCAGTCGACATGAATATTTGGCAACAAAAATTCCTGAAACGAC
CCGCGGAGGATGTTGACAATGGCCCTGACAGCTTTGAACCGCCGCACAAG
TTGCCTAATAATAACAACAATAGCAATAGCAACAACAACAACGGCAATGC
GAATGCCAACAACGGCGGCAATGGCTCCAATACCGGCAACAACACGAACA
ACAATGGCAACAGCACCAACAACAACGGCGGCAGCAACAACAACGGCTCT
GAGAATCTAACCAAATTCTCGGTGGAAATTGTTCAGCAACTGGAGTTTAC
CACATCGGCGGCCAATTCGCAACCGCAACAGATTAGCACTAATGTCACTG
TAAAGGCGCTGACCAACACATCGGTGAAGAGTGAACCAGGTGTGGGCGGT
GGCGGAGGGGGCGGCGGTGGAGGCGGTAGCGGTAACAACAACAATAACGG
AGGCGGGGGAGGCGGCGGAAACGGTAATAACAACAACAACGGAGGTGATC
ATCACCAGCAACAGCACCAGCAGCAGCAGCAACAACAAGGCGGCGGACTG
GGTGGCCTCGGGAATAATGGAAGGGGCGGGGGACCCGGCGGCATGGCGAC
GGGTCCCGGGGGCGTGGCCGGTGGACTTGGCGGCATGGGCATGCCACCCA
ACATGATGTCCGCCCAACAGAAGTCGGCCCTCGGCAATCTGGCCAATTTG
GTGGAGTGCAAACGGGAACCGGATCACGATTTTCCCGATCTCGGCTCATT
GGACAAGGATGGCGGTGGCGGACAGTTTCCCGGCTTTCCCGATCTACTCG
GGGATGATAACTCGGAGAACAACGACACGTTCAAGGATCTCATCAACAAC
CTGCAGGACTTCAATCCCAGTTTCCTCGATGGCTTCGATGAGAAACCGCT
GCTGGACATAAAGACGGAGGATGGCATCAAGGTGGAGCCGCCCAATGCCC
AGGATTTGATCAATAGCCTGAATGTGAAGTCCGAGGGCGGTTTGGGTCAT
GGTTTCGGTGGCTTTGGCCTGGGTCTGGACAATCCGGGCATGAAGATGCG
TGGCGGCAATCCTGGCAACCAAGGTGGCTTTCCCAACGGTCCGAATGGCG
GGACAGGTGGTGCTCCCAATGCTGGTGGTAATGGTGGAAACTCTGGTAAT
CTCATGTCCGAACATCCGTTGGCTGCTCAGACACTCAAGCAAATGGCCGA
GCAGCATCAGCACAAGAATGCCATGGGCGGCATGGGTGGATTCCCACGAC
CGCCGCACGGCATGAATCCGCAGCAACAGCAGCAGCACAAAAATATTGGT
GATATTTTAAATGCTTAAAAGCTTTCTAGACCAT
BS25940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mam-RC | 1302 | CG8118-PC | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| mam-RD | 4785 | CG8118-PD | 696..1955 | 28..1287 | 6300 | 100 | Plus |
| mam-RB | 4785 | CG8118-PB | 696..1955 | 28..1287 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mam-RC | 1941 | CG8118-RC | 557..1859 | 17..1319 | 6515 | 100 | Plus |
| mam-RD | 7884 | CG8118-RD | 1353..2612 | 28..1287 | 6300 | 100 | Plus |
| mam-RB | 7590 | CG8118-RB | 1059..2318 | 28..1287 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14038704..14039968 | 23..1287 | 6310 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-26 22:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2517 | 107..244 | 276 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2631 | 110..332 | 254 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6846 | 424..537 | 216 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2525 | 423..538 | 199 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2426 | 380..538 | 192 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2519 | 428..538 | 192 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6933 | 428..549 | 192 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6838 | 434..546 | 185 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2984 | 161..538 | 184 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6897 | 428..537 | 183 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2474 | 411..538 | 181 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2393 | 470..538 | 180 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2399 | 463..538 | 179 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2371 | 426..537 | 176 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2442 | 423..544 | 174 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6864 | 424..537 | 174 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1577 | 479..538 | 171 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6813 | 462..537 | 169 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1140 | 462..537 | 169 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2413 | 409..537 | 165 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1155 | 466..540 | 165 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 476..538 | 159 | 74.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1128 | 479..537 | 157 | 76.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1161 | 433..537 | 153 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6772 | 498..538 | 151 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2650 | 468..537 | 146 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2663 | 466..538 | 146 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2374 | 467..537 | 145 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 472..538 | 141 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2345 | 500..538 | 141 | 84.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6756 | 501..537 | 140 | 86.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3246..3314 | 472..538 | 133 | 68.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 968..1006 | 499..537 | 132 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2359 | 498..537 | 128 | 80 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2957..3021 | 433..500 | 126 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2339 | 506..538 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1102 | 498..538 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1552 | 503..537 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7988 | 502..536 | 112 | 80 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9398..9432 | 502..536 | 112 | 80 | Plus |
BS25940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 16:05:30 Download gff for
BS25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 541..1840 | 17..1316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:08 Download gff for
BS25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 557..1856 | 17..1316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:50 Download gff for
BS25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mam-RC | 557..1856 | 17..1316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:50 Download gff for
BS25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14038701..14039968 | 17..1287 | 99 | -> | Plus |
| 2R | 14058769..14058797 | 1288..1316 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:08 Download gff for
BS25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9926206..9927473 | 17..1287 | 99 | -> | Plus |
| arm_2R | 9946274..9946302 | 1288..1316 | 100 | | Plus |
BS25940.pep Sequence
Translation from 16 to 1317
> BS25940.pep
MNIWQQKFLKRPAEDVDNGPDSFEPPHKLPNNNNNSNSNNNNGNANANNG
GNGSNTGNNTNNNGNSTNNNGGSNNNGSENLTKFSVEIVQQLEFTTSAAN
SQPQQISTNVTVKALTNTSVKSEPGVGGGGGGGGGGGSGNNNNNGGGGGG
GNGNNNNNGGDHHQQQHQQQQQQQGGGLGGLGNNGRGGGPGGMATGPGGV
AGGLGGMGMPPNMMSAQQKSALGNLANLVECKREPDHDFPDLGSLDKDGG
GGQFPGFPDLLGDDNSENNDTFKDLINNLQDFNPSFLDGFDEKPLLDIKT
EDGIKVEPPNAQDLINSLNVKSEGGLGHGFGGFGLGLDNPGMKMRGGNPG
NQGGFPNGPNGGTGGAPNAGGNGGNSGNLMSEHPLAAQTLKQMAEQHQHK
NAMGGMGGFPRPPHGMNPQQQQQHKNIGDILNA*
BS25940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mam-PC | 433 | CG8118-PC | 1..433 | 1..433 | 2377 | 100 | Plus |
| mam-PD | 1594 | CG8118-PD | 233..653 | 5..425 | 2299 | 99.5 | Plus |
| mam-PB | 1594 | CG8118-PB | 233..653 | 5..425 | 2299 | 99.5 | Plus |
| mam-PA | 1594 | CG8118-PA | 233..653 | 5..425 | 2299 | 99.5 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 122..462 | 20..377 | 213 | 28 | Plus |
