BS25949.complete Sequence
1460 bp assembled on 2011-08-23
GenBank Submission: KX803529
> BS25949.complete
GAAGTTATCAGTCGACATGCCAAGTGAAATAATTACTTTGCAGCTTGGGC
AGTGCGGCAATCAAATTGGCTTTGAGTTCTGGAAAAGATTGTGCCTGGAG
CATGGCATCTCCCCTAGCGGCGTGCTGGAGGACTTTGCCAATGATGGCTT
GGACCGCAAGGATGTGTTCTTCTACCAGGCGGACGACGACCACTACATAC
CCCGCGCGGTGCTCTTGGACTTGGAACCGAGGGTGATCAATACCATAATG
GGCTCGGTCTACTCCAAGCTCTACAATCCGGAAAATGTGTACCTATCCAA
GCACGGAGGCGGTGCGGGCAACAACTGGGCCTCAGGCTATAGCCAGGGCG
AAAAGCTGCAAGAAGAGGTATTCGACATCATTGACCGTGAGGCAGATGGA
AGCGATTCGTTGGAGGGCTTTATACTTTGCCATTCGATTGCTGGCGGAAC
GGGATCGGGAATGGGCTCCTTTATCATGGAGCGCCTGGCGGACCGCTATC
CCAAGAAACTTATCCAAACATTCAGTGTGTTTCCCAATCAGGACGAGATC
AGTGATGTAGTGGTGCAGCCATACAACTCCATGCTCACCCTGAAACGTTT
GACTACGGCTGCGGACAGTGTGGTTGTCCTGGACAACACTGCTCTTAATC
GTATTGCCTGCGATCGCTTGCACATTCAGAATCCCAGCTTTTCGCAGATC
AACAACCTGGTCTCCACCATAATGAGCGTCAGCACCACTACGCTGAGGTA
TCCATCCTACATGAACAACAATCTCATTGGGCTGACGGCTCCTTTAATCC
CGACGCCCCAGCTGCATTTTCTCATGACAGGCTACACGCCGCTGACTAGC
GATTCGGATATCCATACCCAGCAGCTGGTTAATGTGCGAAAGACTACTGT
TCTAGATGTAATGCGGCGTCTGTTGCAGCCCAAGAACATGATGGTGTCCA
CTGGTCCCGACAAGTCAAATCATCACTGCTACATCTCCATTCTAAACATT
ATCCAGGGCGAGGTGGATCCCACTCAAGTGCACAAGTCACTGCAGCGCAT
CCGCGACCGCAAGATGGCCCAGTTCATTCCCTGGGGCCCCACCTCTATCC
AGGTAGCCCTTTCCCGCTCATCGCCCTACGTGCAGAGCAACCATCGAGTG
TCCGGACTGATGCTGGCCAACCACACCAGCATTTGCTCGCTTTTCGAGCG
AGCTCTCAACCAGTATGACAAGCTTCGCAAGCGCGGCGCCTTTCTTGACC
AGTTTCGACGCGAGGACATCTTCAAGGACGACCTCAATGAGCTGGACGAA
TCTCGCGAAACTGTTGACTGCCTGGTGCAAGAGTATGAGGCAGCCACGCG
TGAGGACTACATGCAGTTTTCAGTGAAGCGGGGAAATGGGCCAGTTGACT
CCAAGTCGGAGGATAGTCGATCTGTGACCAGCGCCGGTTCCTAGAAGCTT
TCTAGACCAT
BS25949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub23C-RA | 1428 | CG3157-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| gammaTub37C-RB | 1374 | CG17566-PB | 40..1319 | 56..1347 | 1775 | 76 | Plus |
| gammaTub37C-RA | 1374 | CG17566-PA | 40..1319 | 56..1347 | 1775 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub23C-RA | 1850 | CG3157-RA | 169..1596 | 17..1444 | 7140 | 100 | Plus |
| gammaTub37C-RB | 1628 | CG17566-RB | 114..1393 | 56..1347 | 1775 | 76 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 114..1393 | 56..1347 | 1775 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2973427..2974604 | 267..1444 | 5890 | 100 | Plus |
| 2L | 23513712 | 2L | 19184649..19185220 | 843..272 | 1045 | 78.8 | Minus |
| 2L | 23513712 | 2L | 2973166..2973368 | 66..268 | 1015 | 100 | Plus |
| 2L | 23513712 | 2L | 19184098..19184558 | 1347..887 | 535 | 74.4 | Minus |
| 2L | 23513712 | 2L | 19185350..19185534 | 250..66 | 400 | 81.1 | Minus |
| 2L | 23513712 | 2L | 2973059..2973107 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:48:47 has no hits.
BS25949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:44 Download gff for
BS25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 168..1595 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:32 Download gff for
BS25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 169..1596 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:16 Download gff for
BS25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub23C-RA | 169..1596 | 17..1444 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:16 Download gff for
BS25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2973059..2973107 | 17..65 | 100 | -> | Plus |
| 2L | 2973166..2973368 | 66..268 | 100 | -> | Plus |
| 2L | 2973429..2974604 | 269..1444 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:32 Download gff for
BS25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2973059..2973107 | 17..65 | 100 | -> | Plus |
| arm_2L | 2973166..2973368 | 66..268 | 100 | -> | Plus |
| arm_2L | 2973429..2974604 | 269..1444 | 100 | | Plus |
BS25949.pep Sequence
Translation from 16 to 1443
> BS25949.pep
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDV
FFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGA
GNNWASGYSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMG
SFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAAD
SVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMN
NNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMR
RLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKM
AQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSLFERALNQY
DKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEYEAATREDYMQ
FSVKRGNGPVDSKSEDSRSVTSAGS*
BS25949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub23C-PA | 475 | CG3157-PA | 1..475 | 1..475 | 2466 | 100 | Plus |
| gammaTub37C-PB | 457 | CG17566-PB | 1..448 | 1..452 | 1964 | 83.2 | Plus |
| gammaTub37C-PA | 457 | CG17566-PA | 1..448 | 1..452 | 1964 | 83.2 | Plus |
| betaTub97EF-PC | 457 | CG4869-PC | 3..436 | 4..451 | 749 | 34.5 | Plus |
| betaTub97EF-PB | 457 | CG4869-PB | 3..436 | 4..451 | 745 | 34.1 | Plus |
