BS25952.complete Sequence
1499 bp assembled on 2011-08-23
GenBank Submission: KX805440
> BS25952.complete
GAAGTTATCAGTCGACATGACATCAAATAGTTGTTTAATCAGTCTAGGCC
TTCTCCTGGTCCTTATTCAAATTCTAGCTCCAGCAAAGGCTGCGGAGCAC
TCAGTGTTCACCCACAAAAACGCATCATCGGTCTTGGGTCAATTGGTTAC
CTCGAGTACCCTAGTATGGGAAAGCTATGACCCCAAGGATGCTACACAGT
TGCAGTTCGCCGTGGAGGGCGGAAAGTACGTTACTGAGGATGAGCATTAC
CCCATGTACGTATGTCGTGTACCAATCGATGGTATCCAAGTGTCCGGCCA
TACCGAGAAAATCCTTCAGAGACACGTCTGCCTTGCGGCCCACTATAAGC
ACGGAAAATACGACAACTTCGATGTCCTTATGAACAAGGGTCACCTGGGG
AAGGTTGGCTGGCGTCATTGGCGTAAGTTCGATGCTGGTGTTCCCGTCGG
TGCCATACGCATTGGAGATGACTCTTACATTGGTCGCCATCGGGCCCCAA
GTCAACCGAACAAGGACGGGGTCGTCACCCATTGGGGAGCAGACTTCAAT
CTGGGCCACTTGGAGCCGGTGGGTCTGGGAAAAATTAGGGTCATCGAAGC
CGAACGTGAGAAGTACTACGACGACGGCGAGGTTTTAGTCGAAACAGAGC
CCTTCCGATACGAGCTCAGGGACATCAAACTGGATCGATTGCGCACTGAT
ATTCAAGAGAATATGACTGAACTGGTTACTAGGAAGCTTGAAAATCTGGA
AGATAAATATAGTACTGTGGAGACTATTCTAAGCTATACCTTTAACTATA
ATCAATATTGGGGATCCCACGAGGGTGTTGCTCGTGGTTTACCAACAAAA
ATATTTGAAAAAGATGAAGCCGTTCCGGCTGAAATTAATTGGGCCTTAAA
ACACACCGAAAAGCGATCGGAAAACAAGGCAGTGCACACGAAACTTTGGC
CTGGTACAGCAATTAATGTTACGCTACGTGGCAATTATGTGACCCTGGAG
GCGCCGTACAGTGGCAAGCTCTTTGCTTTTTATTACGGAAGCGATGAAAG
TGTTTCCCGAAAGATCAGCGCAGAGGTGCGAAAGAGCTACTTGAAGGAGG
TGAAGCTGGAGTTCAGCCCCGTCTACTGGATTGAGAACGGTACTCTGGTA
CCCACAACGACCACCACAACGACCACATCCACATCGACCACGACACATGC
CACCACAACCAGCACCAACGAGCCGACGCCCATAAATGAGCCCCCGCTGG
TCCATATGAAGGACAACGGTGTGCAGCATTCAGGTCCCGATACGCTGGAG
AAGACCTTGCATGACTCCCCGTCCAGCAACGAATTAAATTCGCACGAGGC
TCCAGAGAACATGTCCTCCGACCCGGGAAAGGATGTGGCGCTGGCAGGGT
TCGGAGTCAACGCAGCGGGGTCAACATTTATTGCGGGGTCGGCTTTATTA
ACTCTACTTTTAACAATTTTTTTGAGTCTGTAGAAGCTTTCTAGACCAT
BS25952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uzip-RB | 1467 | CG3533-PB | 1..1467 | 17..1483 | 7335 | 100 | Plus |
| uzip-RA | 1467 | CG3533-PA | 1..1467 | 17..1483 | 7335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uzip-RB | 4114 | CG3533-RB | 264..1731 | 17..1484 | 7340 | 100 | Plus |
| uzip-RA | 2463 | CG3533-RA | 264..1731 | 17..1484 | 7340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25027776..25028484 | 17..725 | 3545 | 100 | Plus |
| 2R | 25286936 | 2R | 25028944..25029354 | 1074..1484 | 2055 | 100 | Plus |
| 2R | 25286936 | 2R | 25028541..25028892 | 725..1076 | 1760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:49:38 has no hits.
BS25952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:46 Download gff for
BS25952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 276..1742 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:49 Download gff for
BS25952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 264..1730 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:31 Download gff for
BS25952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 264..1730 | 17..1483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:31 Download gff for
BS25952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25027776..25028484 | 17..725 | 100 | -> | Plus |
| 2R | 25028542..25028891 | 726..1075 | 100 | -> | Plus |
| 2R | 25028946..25029353 | 1076..1483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:49 Download gff for
BS25952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20915299..20916007 | 17..725 | 100 | -> | Plus |
| arm_2R | 20916065..20916414 | 726..1075 | 100 | -> | Plus |
| arm_2R | 20916469..20916876 | 1076..1483 | 100 | | Plus |
BS25952.pep Sequence
Translation from 16 to 1482
> BS25952.pep
MTSNSCLISLGLLLVLIQILAPAKAAEHSVFTHKNASSVLGQLVTSSTLV
WESYDPKDATQLQFAVEGGKYVTEDEHYPMYVCRVPIDGIQVSGHTEKIL
QRHVCLAAHYKHGKYDNFDVLMNKGHLGKVGWRHWRKFDAGVPVGAIRIG
DDSYIGRHRAPSQPNKDGVVTHWGADFNLGHLEPVGLGKIRVIEAEREKY
YDDGEVLVETEPFRYELRDIKLDRLRTDIQENMTELVTRKLENLEDKYST
VETILSYTFNYNQYWGSHEGVARGLPTKIFEKDEAVPAEINWALKHTEKR
SENKAVHTKLWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKI
SAEVRKSYLKEVKLEFSPVYWIENGTLVPTTTTTTTTSTSTTTHATTTST
NEPTPINEPPLVHMKDNGVQHSGPDTLEKTLHDSPSSNELNSHEAPENMS
SDPGKDVALAGFGVNAAGSTFIAGSALLTLLLTIFLSL*
BS25952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uzip-PB | 488 | CG3533-PB | 1..488 | 1..488 | 2568 | 100 | Plus |
| uzip-PA | 488 | CG3533-PA | 1..488 | 1..488 | 2568 | 100 | Plus |
