BS25954.complete Sequence
1511 bp assembled on 2011-08-23
GenBank Submission: KX801037
> BS25954.complete
GAAGTTATCAGTCGACATGGAAACTAAAGCTGGCTTAAGTGCGCTGGAGG
AAAGGTCCCTGAAAGGTTCAGAGAAACTTAAAATGCTGGACATCACTCGC
GACAAGCCGGTGAAGGTGGCCGTCAAAGTGGCCGTTCCTGTGCGGGATCA
CCCAAAGTTCAATTTCGTGGGCAAGCTGCTCGGACCCAAGGGCAACTCGA
TGAAGCGCCTGCAGGAGGACACCATGTGCAAGATGGCCGTTCTGGGACGC
GGATCGATGCGAGACCGGCGGAAGGAGGAGGAGCTGCGGGGCAGTGGCGA
CAGTCGCTACGCCCATCTCTTCGAGGACCTGCACGTCGAGATCTCGACCT
TCGCCGCTCCGGCGGAGGCCCATGCTCGGATAGCCTACGCTCTGGCGGAA
GTGCGCCGCTTTCTGGTTCCGGACTACCACGATGACATCCGCCAGGAGCA
AATGTGGGAAATGCAGGCGCTGACGTCCACGCCCGCACTGGGTGCCCACT
CGCTGGAGGATTCGCATAGCCCTACCATCAACAGCAGTAGCCAGGTGGGC
GGCACCACCAACTCCTCCTCCAACGGGGCCAGTGGGCGTGGCCTGGGCGG
CGGACTAGCCGACATGGACACGTCCAACGATGACAAATCGGACGACGCCA
GCGGCATGGAGTGCCTGTCGGCAGTCGACAAGCTTGACTGCTCGTCCAGC
TGCGCCAGTCTGGGCATCAGTGGCATCACCACCATCAGCACCACCAGCCC
CGAGCATCCGCATCCGCACCAGCACCACCAGCAGCACCAACAGCACCAAC
AGCACCACGCCCACCTGCACCCAGCACACGCCCATGGAAACCAGCAGCAG
CAGCAGCAGGTCCAGCACCACCACAGCCACCAGGCGCACTTCCACCAGCT
CCTGCAGCAGGCTCACGGTGGAGCCAGTGCCGCAGCGGCTGCCTGCGGGG
AGCATCTCTCTGGACAGACGACTCCGGCGACGGCGGCGGCATTGCACACC
ACAGCCATGGCAGTGGCACTCCAGCATCAGCTCACAGCCGCAGGAATCGG
AGGACTCCTGAAGCCGGCCACCGGAGTGGGGGCCACCATGGCCGGGCTGC
CCACCACCCAGGCGGGAGCCGCCGCCCTTCAGTTGCCCGGCGATGGGGAG
TCATCTGGATCGACGCTCACGCTGCTGGAGCCACCGGGCACCGCACTCCT
GCATCCCGCTCTGCGCAACGTCAAGACCATCAACATAGGTGGCGGCCTGG
GAAGGAAGCGTCCCCTGCTGGGTGTTCCCCGCTCCGGAATGAACCCCACA
AAGCGCACGGTGATGAGCCTGCTGGCCAGGGCCAAGAACTCGCAGGCGCT
GCACTCGGTCCGCCAACCGATGGTGACGGCCACCAGTTTCGCTGAACCCT
TGCAGATGCTGGCCTCGCCGTTCATCATTCCGCACCGGGCGGTGGACCAG
CCGATCCTGGCGCTGTCGAAGGAGAGCCTCGCGCAGGGCGTCTAAAAGCT
TTCTAGACCAT
BS25954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10384-RE | 1479 | CG10384-PE | 1..1479 | 17..1495 | 7395 | 100 | Plus |
CG10384-RD | 1479 | CG10384-PD | 1..1479 | 17..1495 | 7395 | 100 | Plus |
qkr58E-1-RD | 1140 | CG3613-PD | 371..506 | 150..285 | 245 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10384-RE | 3849 | CG10384-RE | 753..2231 | 17..1495 | 7395 | 100 | Plus |
CG10384-RD | 2509 | CG10384-RD | 753..2231 | 17..1495 | 7395 | 100 | Plus |
qkr58E-1-RD | 1902 | CG3613-RD | 494..629 | 150..285 | 245 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22469585..22470156 | 421..992 | 2860 | 100 | Plus |
2R | 25286936 | 2R | 22466682..22466948 | 156..422 | 1335 | 100 | Plus |
2R | 25286936 | 2R | 22470627..22470878 | 989..1240 | 1245 | 99.6 | Plus |
2R | 25286936 | 2R | 22471026..22471184 | 1237..1395 | 795 | 100 | Plus |
2R | 25286936 | 2R | 22471278..22471377 | 1396..1495 | 500 | 100 | Plus |
2R | 25286936 | 2R | 22466475..22466563 | 69..157 | 445 | 100 | Plus |
2R | 25286936 | 2R | 22460092..22460146 | 17..71 | 275 | 100 | Plus |
2R | 25286936 | 2R | 22414825..22414960 | 285..150 | 245 | 78.7 | Minus |
2R | 25286936 | 2R | 17471170..17471264 | 156..250 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:50:07 has no hits.
BS25954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:47 Download gff for
BS25954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RC | 1..1411 | 83..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:01 Download gff for
BS25954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RD | 753..2229 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:42 Download gff for
BS25954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10384-RD | 753..2229 | 17..1493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:42 Download gff for
BS25954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22471028..22471184 | 1239..1395 | 100 | -> | Plus |
2R | 22471278..22471375 | 1396..1493 | 100 | | Plus |
2R | 22460092..22460146 | 17..71 | 100 | -> | Plus |
2R | 22466478..22466563 | 72..157 | 100 | -> | Plus |
2R | 22466684..22466947 | 158..421 | 100 | -> | Plus |
2R | 22469586..22470156 | 422..992 | 100 | -> | Plus |
2R | 22470631..22470876 | 993..1238 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:01 Download gff for
BS25954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18347597..18347651 | 17..71 | 100 | -> | Plus |
arm_2R | 18353983..18354068 | 72..157 | 100 | -> | Plus |
arm_2R | 18354189..18354452 | 158..421 | 100 | -> | Plus |
arm_2R | 18357091..18357661 | 422..992 | 100 | -> | Plus |
arm_2R | 18358136..18358381 | 993..1238 | 100 | -> | Plus |
arm_2R | 18358533..18358689 | 1239..1395 | 100 | -> | Plus |
arm_2R | 18358783..18358880 | 1396..1493 | 100 | | Plus |
BS25954.pep Sequence
Translation from 16 to 1494
> BS25954.pep
METKAGLSALEERSLKGSEKLKMLDITRDKPVKVAVKVAVPVRDHPKFNF
VGKLLGPKGNSMKRLQEDTMCKMAVLGRGSMRDRRKEEELRGSGDSRYAH
LFEDLHVEISTFAAPAEAHARIAYALAEVRRFLVPDYHDDIRQEQMWEMQ
ALTSTPALGAHSLEDSHSPTINSSSQVGGTTNSSSNGASGRGLGGGLADM
DTSNDDKSDDASGMECLSAVDKLDCSSSCASLGISGITTISTTSPEHPHP
HQHHQQHQQHQQHHAHLHPAHAHGNQQQQQQVQHHHSHQAHFHQLLQQAH
GGASAAAAACGEHLSGQTTPATAAALHTTAMAVALQHQLTAAGIGGLLKP
ATGVGATMAGLPTTQAGAAALQLPGDGESSGSTLTLLEPPGTALLHPALR
NVKTINIGGGLGRKRPLLGVPRSGMNPTKRTVMSLLARAKNSQALHSVRQ
PMVTATSFAEPLQMLASPFIIPHRAVDQPILALSKESLAQGV*
BS25954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10384-PE | 492 | CG10384-PE | 1..492 | 1..492 | 2537 | 100 | Plus |
CG10384-PD | 492 | CG10384-PD | 1..492 | 1..492 | 2537 | 100 | Plus |
qkr54B-PD | 428 | CG4816-PD | 105..275 | 18..195 | 484 | 56.2 | Plus |
qkr54B-PB | 428 | CG4816-PB | 105..275 | 18..195 | 484 | 56.2 | Plus |
qkr54B-PA | 428 | CG4816-PA | 105..275 | 18..195 | 484 | 56.2 | Plus |