BS25966.complete Sequence
1781 bp assembled on 2011-08-25
GenBank Submission: KX804558
> BS25966.complete
GAAGTTATCAGTCGACATGCCCCAGATGAGGGCTGCGGCCGCTGAGGCGG
TGGCCGCCGGCAGCGCCAATGGCCAGCCGCTGGTCAAGATTGGGCACTAC
CTACTGGGCGCAACCCTGGGAACGGGAACCTTCGGCAAGGTGAAGATCGG
CGAGCACCAGATCACACGCGTCAAGGTGGCCGTCAAGATACTCAATCGTC
AGAAGATCAAAAGCCTGGACGTCGTGGGCAAGATCCGGCGTGAGATCCAG
AACCTAAAGCTCTTCCGCCATCCGCACATCATCAAGTTGTACCAGGTCAT
ATCGACGCCGTCGGACATCTTCATGATCATGGAGTACGTGAGCGGCGGGG
AGCTGTTCGACTATATTGTGAAGCACGGCAAGCTGCAGGAGCACCAAGCG
CGCCGCTTTTTTCAGCAGATTATCTCTGGCGTGGACTATTGCCACCGGCA
CATGATCGTGCATCGAGACCTGAAGCCAGAGAACCTGCTGCTCGACCACA
ACATGCACGTGAAGATCGCCGACTTTGGGCTCTCGAACATGATGCTGGAC
GGCGAGTTCCTGCGCACCTCGTGCGGCTCGCCCAACTACGCGGCGCCCGA
GGTGATTTCCGGCAAGCTGTACGCCGGTCCCGAGGTGGACATCTGGTCGT
GCGGCGTCATCCTGTACGCCCTGCTGTGCGGGACGCTGCCCTTTGACGAC
GAGCATGTGCCTACGCTGTTTCGCAAGATCAAGTCGGGCATTTTCCCCAT
TCCCGAGTACCTCAACAAACAAGTGGTCAATCTGGTCTGTCAGATGCTGC
AAGTGGACCCGCTCAAGCGGGCCAACATCGAGGAAATCAAGAAGCACGAG
TGGTTCCAAAAGGACCTCCCGGCCTACCTCTTCCCCTCGTCCATCGAGCA
GGACTCCAATGTGATCGACACCTACGCTGTGGCAGAGGTCTGCACCAAGT
TCGGCGTCAAGGAGACCGAGGTGCACAACTCGCTGCTCAGCGGCGATCCG
CACGATCAGCTGGCCATCGCTTACCATCTGATCATCGACAACAAACGCTT
CGCCGACGACGCGGCCAACCAAATAAACGAGATCAACAACTTCTTTGTGG
CCGGCTCTCCACCACCGCCGCCGCCTCCGCCCGTTCCCCAATCATCGATG
GACCACCAAGCCCCTCTGGCCACCGTGACCGTTGGCGGAGGTACCTCAGC
CAGCTCGGGCACCGCCACACCAGTGCCACCAGTGGCTGGAGGCACGCCTA
GCAGCACCATACCCATTCGACCGCATCCGGAGCGGATTGCGCCGATGCGG
GACCGTCAACTGGCCATGTCCGTGCAGACATCTGGCGGCGGAGCCTTCCC
GGAGAAAACCGCACGTGGCGGCACTCCCATCAAGCGCGCCAAGTGGCATC
TGGGCATCCGGTCGCAGAGCAAGCCCAACGACATAATGCTCGAGGTATAC
CGAGCGATGAAGGCACTCAGCTACGAGTGGAAGATCATCAATCCGTACCA
CGTTCGGGTGCGCAGGCAGAACGTGAAGACCGGCAAGTTCTCGAAGATGT
CACTGCAGCTGTACCAGGTGGACGCCAAGAGCTATCTGCTCGACTTCAAG
TCGCTGACCAACGACGAGGTCGAGCAGGGCGACGACGTCATCATGGAGAG
CCTTACTCCGCCGCCGCTTAGCGTGTCCGGGGTGATGCCGCTGCAGCCGA
CCGGCCACCACACCATGGAGTTTTTCGAAATGTGCGCCGCCCTGATCATT
CAACTGGCTCGCTAAAAGCTTTCTAGACCAT
BS25966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPKalpha-RC | 1749 | CG3051-PC | 1..1749 | 17..1765 | 8745 | 100 | Plus |
| AMPKalpha-RB | 1749 | CG3051-PB | 1..1749 | 17..1765 | 8745 | 100 | Plus |
| AMPKalpha-RA | 1749 | CG3051-PA | 1..1749 | 17..1765 | 8745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPKalpha-RC | 2739 | CG3051-RC | 255..2008 | 12..1765 | 8755 | 99.9 | Plus |
| AMPKalpha-RB | 2853 | CG3051-RB | 369..2122 | 12..1765 | 8755 | 99.9 | Plus |
| AMPKalpha-RA | 2708 | CG3051-RA | 263..2016 | 12..1765 | 8755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1376694..1378165 | 294..1765 | 7360 | 100 | Plus |
| X | 23542271 | X | 1375904..1376189 | 12..297 | 1415 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:03:35 has no hits.
BS25966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 16:28:41 Download gff for
BS25966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF1A-RC | 249..1995 | 17..1763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:18 Download gff for
BS25966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF1A-RA | 268..2014 | 17..1763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:58 Download gff for
BS25966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AMPKalpha-RA | 268..2014 | 17..1763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:58 Download gff for
BS25966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1375909..1376187 | 17..295 | 100 | -> | Plus |
| X | 1376696..1378163 | 296..1763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:18 Download gff for
BS25966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1269942..1270220 | 17..295 | 100 | -> | Plus |
| arm_X | 1270729..1272196 | 296..1763 | 100 | | Plus |
BS25966.pep Sequence
Translation from 16 to 1764
> BS25966.pep
MPQMRAAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQIT
RVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSD
IFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHR
DLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGK
LYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLN
KQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAYLFPSSIEQDSNVI
DTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADDAA
NQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGTSASSGTA
TPVPPVAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTSGGGAFPEKTAR
GGTPIKRAKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVRR
QNVKTGKFSKMSLQLYQVDAKSYLLDFKSLTNDEVEQGDDVIMESLTPPP
LSVSGVMPLQPTGHHTMEFFEMCAALIIQLAR*
BS25966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPKalpha-PC | 582 | CG3051-PC | 1..582 | 1..582 | 3045 | 100 | Plus |
| AMPKalpha-PB | 582 | CG3051-PB | 1..582 | 1..582 | 3045 | 100 | Plus |
| AMPKalpha-PA | 582 | CG3051-PA | 1..582 | 1..582 | 3045 | 100 | Plus |
| sff-PB | 845 | CG6114-PB | 15..342 | 25..344 | 718 | 43.4 | Plus |
| sff-PC | 851 | CG6114-PC | 15..342 | 25..344 | 718 | 43.4 | Plus |
