BS25969.complete Sequence
1820 bp assembled on 2011-08-23
GenBank Submission: KX801906
> BS25969.complete
GAAGTTATCAGTCGACATGAAAGTCAAAGTGGAGCGCACAACGAAAAAGC
CCGCCATCAGAAAGCCCGAGGATCCAGATCCGGCGGAAGAGGACAGGGTC
AAGATGGTGCAGGATGACCCAGAGGACCAGGAGAACCAGGCGGTGGATGA
GGAGGAGCTGGACTTTCTGCCCGCCGATCTAAGCGCTGCGATATCGACGG
CGACAACGAAAATAGCAACACCGACGCGCAATCTTATCCTCGGCAACTTT
GAGACCGGCCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGAC
CACCACGCGCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGC
AGACCGATCGTGTGGCTGGTTGCGCGGGATTTGCAGTGCCAAAGGTGCTA
CCCAATGCCATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTC
GCTCCCACTTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGT
CCGAGGACTCCAACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAG
GACACGACCGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGC
TGGCCACATCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCT
CCAATGTCCTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGC
AGCAGCAACGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGTGGCAG
ACGCCCCAACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGG
CCGTGCGCCGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGG
CGCGTGGACCAGACCAACGAGCTCACCGAGGAGGTGGAGCAGCTGGAGAA
GCGGGGCGAGAGCATGCGCAAGGAGATCGAGGTGCTGACGAATAGCAAGA
ATCAGCTGGAGTACCTTCTGGCCACCCACCGGGCCACCTGCCAAAAGATT
CGCTCCGACATGCTGAGCGTGGTCACCTGCAACGGTCTGATTGCCCCGGC
CGGACTCCTGAGTGCAGGGAGCAGCGGCAGCGGCGCGAGCAGCCATCACA
ACCACAACAGCAACGACAGCAGCAACGGCACGATTACGGGCATGGACGCC
ACGCTGAACTCCACCGGGAGGAGCAATTCACCCTTGGATCTCAAGCCGGC
GGCGAACATCGATAGCCTGCTGATGCACATCAAGGACGAGCCACTCGATG
GCGCCATCGACTCAGGATCCAGCCTGGACCAGGACGGTCCGCCGCCCAGC
AAGCGCATCACCTTGCCGCCCATGTCCACGATGCCGCACGTTCACTTGTC
CACGATATTAACGCCCACCGGCGCCTCGTCGGGATCTCTGCAGACGCCGA
TCACGAGCACGGCGCCCGGCGGATTCGGCAGCGCCTTCCCGGTGACCTCC
AACGGCAGCAGCATCAACAACATCAACAGCATCGGCAACAACATGAACTC
TCCCACGCTGAATGCGCATAACAAGGTGCCTAAGGAGCGGCCCAATACGC
TGGCTTTCCAGCGTCCTCTGGGCCAGATGCACCTCACCATGGCCAACAAC
AAGGCGGGTGGGCCCACGCAGATCCAGGGCGTGCCCATCCAGACGCCCTC
GACCGGCACCTTCAACTTCGACTCCCTGATGGACGGCGGCACTGGGCTAA
CGCCCGTCTCCGGACCCCTCGTACCGAACAGCTCCTCCACGAACAAGCAC
CCGCTGGAGCTGCCCACGCCCACCGCCGAGCCGTCCAAGCTGGTCAGCTT
ATAAAAGCTTTCTAGACCAT
BS25969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RA | 1788 | CG33956-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
| kay-RG | 1941 | CG33956-PG | 376..1941 | 239..1804 | 7830 | 100 | Plus |
| kay-RF | 2268 | CG33956-PF | 703..2268 | 239..1804 | 7830 | 100 | Plus |
| kay-RG | 1941 | CG33956-PG | 1..222 | 17..238 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RA | 3585 | CG33956-RA | 709..2496 | 17..1804 | 8940 | 100 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..2649 | 239..1804 | 7830 | 100 | Plus |
| kay-RF | 4574 | CG33956-RF | 1920..3485 | 239..1804 | 7830 | 100 | Plus |
| kay-RG | 3738 | CG33956-RG | 709..930 | 17..238 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791787..29793024 | 567..1804 | 6190 | 100 | Plus |
| 3R | 32079331 | 3R | 29791393..29791720 | 239..566 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 29773600..29773821 | 17..238 | 1110 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2468 | 1068..1176 | 158 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2925..3024 | 1081..1174 | 153 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1578 | 1459..1498 | 146 | 85 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2409 | 1450..1498 | 146 | 77.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1140 | 1068..1130 | 142 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2528 | 1450..1506 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2473 | 1450..1493 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2662 | 1053..1130 | 127 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1552 | 1099..1130 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1493..1551 | 1441..1498 | 121 | 69.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1128 | 1068..1130 | 117 | 65.1 | Plus |
BS25969.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:51 Download gff for
BS25969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 707..2492 | 17..1802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:30 Download gff for
BS25969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 709..2494 | 17..1802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:55 Download gff for
BS25969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 709..2494 | 17..1802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:55 Download gff for
BS25969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29773600..29773821 | 17..238 | 100 | -> | Plus |
| 3R | 29791393..29791720 | 239..566 | 100 | -> | Plus |
| 3R | 29791787..29793022 | 567..1802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:30 Download gff for
BS25969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25599322..25599543 | 17..238 | 100 | -> | Plus |
| arm_3R | 25617115..25617442 | 239..566 | 100 | -> | Plus |
| arm_3R | 25617509..25618744 | 567..1802 | 100 | | Plus |
BS25969.pep Sequence
Translation from 16 to 1803
> BS25969.pep
MKVKVERTTKKPAIRKPEDPDPAEEDRVKMVQDDPEDQENQAVDEEELDF
LPADLSAAISTATTKIATPTRNLILGNFETGQSVLTLTTPTLTPTTTRNI
EDTLGHLLSDTQTDRVAGCAGFAVPKVLPNAIDVLGMGIPTGVSSLPLQQ
TFDLSLGQGSESEDSNASYNDTQMNEEQDTTDTSSAHTDSTSYQAGHIMA
GSVNGGGVNNFSNVLAAVSSSRGSASVGSSNANTSNTPARRGGGRRPNRS
TNMTPEEEQKRAVRRERNKQAAARCRKRRVDQTNELTEEVEQLEKRGESM
RKEIEVLTNSKNQLEYLLATHRATCQKIRSDMLSVVTCNGLIAPAGLLSA
GSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANIDS
LLMHIKDEPLDGAIDSGSSLDQDGPPPSKRITLPPMSTMPHVHLSTILTP
TGASSGSLQTPITSTAPGGFGSAFPVTSNGSSINNINSIGNNMNSPTLNA
HNKVPKERPNTLAFQRPLGQMHLTMANNKAGGPTQIQGVPIQTPSTGTFN
FDSLMDGGTGLTPVSGPLVPNSSSTNKHPLELPTPTAEPSKLVSL*
BS25969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-PA | 595 | CG33956-PA | 1..595 | 1..595 | 3046 | 100 | Plus |
| kay-PG | 646 | CG33956-PG | 1..646 | 1..595 | 2984 | 92.1 | Plus |
| kay-PB | 546 | CG33956-PB | 25..546 | 74..595 | 2676 | 99.8 | Plus |
| kay-PF | 755 | CG33956-PF | 235..755 | 75..595 | 2673 | 100 | Plus |
| kay-PD | 722 | CG33956-PD | 202..722 | 75..595 | 2673 | 100 | Plus |
