BS25972.complete Sequence
1874 bp assembled on 2011-09-19
GenBank Submission: KX804051
> BS25972.complete
GAAGTTATCAGTCGACATGTTGGCGAGATGTGTTTTGTTCGTCACTTGGC
TGGCGGTTTTCATTGCGACTGGAAAAAGTGACGATCAGTTGATGAAGCTC
CCCGCCTGCGCCGCCAAACAGGGAGAGTGCGATGATAACGAGGGTCCCGT
CTGCGGCACCGATGGCCAAACCTATCCCACCAGGTGTCATCTGCTGCGGG
CGCAGTGCGGTGGCCACCAGGTGAGCCTCAAGTACAGCGGCTCCTGCAAT
GCCTGCCTGGAGGCGGTGAAATTTGCCCGTCGTCAGCAGGAGCGAGATCC
CGGATACTTTGTGCCCCGATGCAGGAAGGATGGCAACTTTGCGGCTATGC
AGTGCTACGGGAACAACGGATGCTGGTGCAGCGACAGTCAGGGCAGGCCC
ATCGCGGATGATAACAAGCAATTCCGGCGAAAGGGAAAGCTGCGCTGCAG
GGCCAATCGACGTGACCGACGCCGCCTGGCATCGCATCAGATTGGCTACA
ATCCGGATACATCTGCGTCCAAAGGCAGTTCGGAGGCAGGATCAACAGCC
CACCGGACTTGCAGCAAGTCCGATCGGTCGCAATTCAACACCAACCTGAT
GAGGATGTTCCGGAACGAGGCTCAGAGCTTTTTCCGCCAGCCATCTCTCT
CGGATTCCCACATCCTGGAGTGGCAGTTCTCCAAGCTGGACACGAATGGC
AACAAGTTGCTCGATCGTCAGGAGATTCGGGAGCTGAAGAAGGTACTCAG
GCGGAACGTTAAACCTCGTCGTTGTGGACGGACCTTTGGTAAATACTGTG
ATGTAACCAAGGATGCCAATCTCAATTGGTTGGAATGGAGCGTCTGCTTT
ACCAAGGAGTTTCACAACCGTAGTGCTGTCGTAAATCTTCTGGCGAGCAG
TGCAGCCACCGCACCACCACACTCCACCCACTACAGCATCCACAACACCA
ACGTCAATGGCCACCACCGAGGTCACACCAATACCATTGGCACTGGAGTT
AATCCACACTCATATTCCGAGGATGCGAGTGGCAGTGAGGAGCACGAGGA
CAACTACGAGGACAGTGCAACGGGCTACGGAGGTGAAGAGGACGACTCGC
AAGGAGCAGATCTGCCCAGTTCACGAACGCATATCCCATCATTATATATG
CTCAACTCAAAGCCAGAGACGGCGAGCCAGGACTTGGAAAATGACTCCAA
CTGCTGGATGGATCAGTCGGTCACGCTGGAGGAGCAAGGCCACGGTGGAA
AGAGCGTCCTATTTGTGCCGCAGTGCCTTCCGGATGGTCGCTATCAGCGC
ATTCAGTGCTACTCCTCCACGTCCACTTCGTACTGCTGGTGCGTCAACGA
GGACACGGGAAAGAGCATCCCGGGCACATCGGTGAAGAACAAGCGGCCTC
AGTGTGACGAGAGCGTGGCCGTGCGACCCATGAAGGGATGCACCGAGCCG
CGCAAGACGCAGTTCCTCAAAGAGCTAAAGGCTTACCTCAACACCTCTCT
TCTGCCCAGCAGCACCACCGGTTCGAATTCTAGCATGTGGAAAACAGACG
ATGAGCGAATCGCCACTCTGAGCTTTGTTTATCTGGACAAGAACAAGAAT
AAGTCGTGGGATCGTCGAGAGTGGAAGAACTTTCGCGATCTGGTTACCAG
TGCCAGCCACTTGCGCAGATGCGGCAAGAAGATGCCGCGCTACTGCGACG
TCAATGGTGACAAAAAGATCTCGCTGGCCGAGTGGCTCAATTGCCTGCAA
GCAACTCCGCGGGAAAGTGCCACCACGGCCAAGCCGGCACAGTCAAATGA
GACCGCCAGTCCAAAGTTTCAAGGTGTGAATCCGGTGGAGCGATATCTGA
AAGATTAAAAGCTTTCTAGACCAT
BS25972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| magu-RD | 1842 | CG2264-PD | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| magu-RB | 1842 | CG2264-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| magu-RA | 1842 | CG2264-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| magu-RD | 2710 | CG2264-RD | 316..2157 | 17..1858 | 9210 | 100 | Plus |
| magu-RB | 2838 | CG2264-RB | 444..2285 | 17..1858 | 9210 | 100 | Plus |
| magu-RA | 2994 | CG2264-RA | 600..2441 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10060686..10061189 | 251..754 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 10062250..10062530 | 1241..1521 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 10061618..10061896 | 870..1148 | 1395 | 100 | Plus |
| 2R | 25286936 | 2R | 10060222..10060382 | 91..251 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 10062897..10063039 | 1654..1796 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 10062705..10062840 | 1521..1656 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 10061249..10061366 | 754..871 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 10062100..10062191 | 1149..1240 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 10057269..10057343 | 17..91 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 10063094..10063159 | 1793..1858 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:58:43 has no hits.
BS25972.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:17:14 Download gff for
BS25972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| magu-RB | 444..2278 | 22..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:00 Download gff for
BS25972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| magu-RA | 605..2439 | 22..1856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:33 Download gff for
BS25972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| magu-RA | 605..2439 | 22..1856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:33 Download gff for
BS25972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10057274..10057343 | 22..91 | 100 | -> | Plus |
| 2R | 10060223..10060382 | 92..251 | 100 | -> | Plus |
| 2R | 10060687..10061189 | 252..754 | 100 | -> | Plus |
| 2R | 10061250..10061364 | 755..869 | 100 | -> | Plus |
| 2R | 10061618..10061896 | 870..1148 | 100 | -> | Plus |
| 2R | 10062100..10062191 | 1149..1240 | 100 | -> | Plus |
| 2R | 10062250..10062530 | 1241..1521 | 100 | -> | Plus |
| 2R | 10062706..10062840 | 1522..1656 | 100 | -> | Plus |
| 2R | 10062900..10063039 | 1657..1796 | 100 | -> | Plus |
| 2R | 10063098..10063157 | 1797..1856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:00 Download gff for
BS25972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5947728..5947887 | 92..251 | 100 | -> | Plus |
| arm_2R | 5944779..5944848 | 22..91 | 100 | -> | Plus |
| arm_2R | 5948192..5948694 | 252..754 | 100 | -> | Plus |
| arm_2R | 5948755..5948869 | 755..869 | 100 | -> | Plus |
| arm_2R | 5949123..5949401 | 870..1148 | 100 | -> | Plus |
| arm_2R | 5949605..5949696 | 1149..1240 | 100 | -> | Plus |
| arm_2R | 5949755..5950035 | 1241..1521 | 100 | -> | Plus |
| arm_2R | 5950211..5950345 | 1522..1656 | 100 | -> | Plus |
| arm_2R | 5950405..5950544 | 1657..1796 | 100 | -> | Plus |
| arm_2R | 5950603..5950662 | 1797..1856 | 100 | | Plus |
BS25972.pep Sequence
Translation from 16 to 1857
> BS25972.pep
MLARCVLFVTWLAVFIATGKSDDQLMKLPACAAKQGECDDNEGPVCGTDG
QTYPTRCHLLRAQCGGHQVSLKYSGSCNACLEAVKFARRQQERDPGYFVP
RCRKDGNFAAMQCYGNNGCWCSDSQGRPIADDNKQFRRKGKLRCRANRRD
RRRLASHQIGYNPDTSASKGSSEAGSTAHRTCSKSDRSQFNTNLMRMFRN
EAQSFFRQPSLSDSHILEWQFSKLDTNGNKLLDRQEIRELKKVLRRNVKP
RRCGRTFGKYCDVTKDANLNWLEWSVCFTKEFHNRSAVVNLLASSAATAP
PHSTHYSIHNTNVNGHHRGHTNTIGTGVNPHSYSEDASGSEEHEDNYEDS
ATGYGGEEDDSQGADLPSSRTHIPSLYMLNSKPETASQDLENDSNCWMDQ
SVTLEEQGHGGKSVLFVPQCLPDGRYQRIQCYSSTSTSYCWCVNEDTGKS
IPGTSVKNKRPQCDESVAVRPMKGCTEPRKTQFLKELKAYLNTSLLPSST
TGSNSSMWKTDDERIATLSFVYLDKNKNKSWDRREWKNFRDLVTSASHLR
RCGKKMPRYCDVNGDKKISLAEWLNCLQATPRESATTAKPAQSNETASPK
FQGVNPVERYLKD*
BS25972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| magu-PD | 613 | CG2264-PD | 1..613 | 1..613 | 3333 | 100 | Plus |
| magu-PB | 613 | CG2264-PB | 1..613 | 1..613 | 3333 | 100 | Plus |
| magu-PA | 613 | CG2264-PA | 1..613 | 1..613 | 3333 | 100 | Plus |
| magu-PF | 520 | CG2264-PF | 1..284 | 1..284 | 1557 | 100 | Plus |
| magu-PF | 520 | CG2264-PF | 285..520 | 378..613 | 1272 | 99.6 | Plus |
| magu-PF | 520 | CG2264-PF | 323..506 | 98..301 | 164 | 26.6 | Plus |
| magu-PF | 520 | CG2264-PF | 98..277 | 416..576 | 159 | 26.2 | Plus |
