BS25974.complete Sequence
1910 bp assembled on 2011-08-23
GenBank Submission: KX802090
> BS25974.complete
GAAGTTATCAGTCGACATGGAAGCCCGGCCAGCGAAACGCTCCACAGCGG
CCTCCGTCTTCCGGTCGCATCACATGCCGCGGGAGTCGGATCTGGTGGAC
ATCGGCAGCGATGCCTCGCTGTACTGCGGCTCCGACGGGGAGTCCAGTCA
GGCCCAGTCCACATCCACATCCACTCCGAACCCGCAAACGAGTTCCGACC
AGGATCTGGACCAGCCTCAGCCAACACCTCGCGCGGCACCGAGAGCATCG
GCCTCCAATAATCCGCCAACACCCAAGCCACGACAGGCTATCAGGTCATC
AAAAGTGCTTCCAAGTGCAAACTCCACGCTGTCACGATCCAGACAGCGGC
TCATCAAAGTGGACTTCTCCAAGTTTCAGGACGACGATCTCTTCTACGAT
GAGAACAGCATCAGCAGCTCCCACTCCACAGCGGCCACCCACCAGCATCA
TCCACATTTCGCCGAGATGCACCGCTGCTCGCAGCCCAAGATGCCGCCGT
ATCCATTCGGTGGCTACATGGTGCCCAGTCAGGCACGACAAGATTGCCGG
GAGACGGCGTCGCTGATGCGGCCCCGACGCACAATGGAGCCAGCAAAGCA
GGTGCCGCCTCCAGAAGAGCCATCCTTCACGAAGGACGAGTACCACAAGT
TCTACGACACGGCCCTGGAATCCTACGACCTGGCCACTCAGTGCGAGTCG
AGGAGGGCTTCCTTGCGCCGCCACACCATCGTTGGATGCCAGAGCAACCT
GGACGAGACGCACTCAATGCCGCCCACGCGGCCCGAGTCGCGTCAATCGG
ACGACGTCAGCAAGGAGACGCCTAAGAGAAGTCCTGCGGAGCAGACCCAT
CCCTCAGACGAGGGCAGTTCAACATCCTCGCTTGGGCCATGGAACAAGTC
CTTCATGGACAAACAGACGTGGATGGAACGGGGTGACGATCGGCTGTCCG
TAACGCTGGCGGAGATCGTTCACATCCGTTCCGTCATGACCAAGGCGGAG
CTGGAGGGCCTGCCGATGGACGTGCGCGTCAAGGAGGATGTTGAAAAGCG
TCGCGTCTGCTTCCTGTGCCTGCGCACTCGGTTCTCGTTCTTCGGTCCCT
GGGGCATTCAGTGCAAGTTGTGCCAGCGCACGGTCTGCGCCAAGTGCTAT
ACCAAGATGCGAATTCCCTCGGAGCACTTCCGAAACGTGCCCCTCGTGCT
GATCTCGCCATCGCTGCTGTCCAGTCCGGCCAGCTCGAGCACCCCATCAC
CCTCCCATCATGCCCAGCAGGCGCACTCATCCTCGACGGGGAACATCATG
GACGACCAGTTCCCCAAGTCGTTGATAGAGCGTCTTTTGCGCTCCGAGTC
AGATCGAAAGACTCGCAGCACTGTGGGCAGTGCCCCATCCTCACCCAAGC
ACCAAAGATCAAACATGAGCACGCCCGGCATTAGCGTGGGACCCGGAGCA
TCCTCCTCCTCAGCGGCCGCCACTGGACAGGCCGTGGAGGCACTGCACGA
CCAGGCGACCATGTCGTCCTCGTATTCCGCGGCCATGCGACCCTCTGGCG
TCCACCAGCAGCAGAAGCAGCACTACAACAACGCCATGTCGAGGAGCATG
GAGGGACCCCGAAGTCTGCCCGTGCACAGTCCAGCATATCGACCGCTCTC
CAATAACAGCACCTTGGAGAGGAAATCCCGCTTTTCGAGGGGATTCAACC
TGTTCTCCTCGGGCAGCCATCTTGCCCAGACGCAGGAGCAAAAGGAGAAC
CTGCGCGGCGAGCAGGTGACCGTGTGCAACGACTGCCAGGGACTGGTCAA
CGAGATCACGAGCTCCGTGAAGCAGAAGCGCAGCTCCGCACGGAACCGCA
CCATTCAGAATCTCACCCTGGATCTGACGCCCGTCTGGAAGTAGAAGCTT
TCTAGACCAT
BS25974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RC | 1878 | CG10076-PC | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| spir-RF | 3057 | CG10076-PF | 1468..3057 | 305..1894 | 7950 | 100 | Plus |
| spir-RA | 3063 | CG10076-PA | 1474..3063 | 305..1894 | 7950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RC | 3437 | CG10076-RC | 342..2220 | 16..1894 | 9395 | 100 | Plus |
| spir-RF | 4875 | CG10076-RF | 2069..3658 | 305..1894 | 7950 | 100 | Plus |
| spir-RA | 4881 | CG10076-RA | 2075..3664 | 305..1894 | 7950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20345904..20346244 | 816..1156 | 1705 | 100 | Plus |
| 2L | 23513712 | 2L | 20346576..20346891 | 1359..1674 | 1580 | 100 | Plus |
| 2L | 23513712 | 2L | 20342192..20342481 | 16..305 | 1450 | 100 | Plus |
| 2L | 23513712 | 2L | 20346950..20347169 | 1675..1894 | 1100 | 100 | Plus |
| 2L | 23513712 | 2L | 20343740..20343947 | 377..584 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 20346306..20346511 | 1155..1360 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 20345525..20345670 | 672..817 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 20345173..20345259 | 585..671 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 20343597..20343673 | 304..380 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1053..1101 | 1548..1598 | 124 | 74.5 | Plus |
BS25974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:53 Download gff for
BS25974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 341..2218 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:29 Download gff for
BS25974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 343..2220 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:42 Download gff for
BS25974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RC | 343..2220 | 17..1894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:42 Download gff for
BS25974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20343599..20343672 | 306..379 | 100 | -> | Plus |
| 2L | 20342193..20342481 | 17..305 | 100 | -> | Plus |
| 2L | 20345906..20346244 | 818..1156 | 100 | -> | Plus |
| 2L | 20346308..20346511 | 1157..1360 | 100 | -> | Plus |
| 2L | 20346578..20346891 | 1361..1674 | 100 | -> | Plus |
| 2L | 20346950..20347169 | 1675..1894 | 100 | | Plus |
| 2L | 20343743..20343947 | 380..584 | 100 | -> | Plus |
| 2L | 20345173..20345259 | 585..671 | 100 | -> | Plus |
| 2L | 20345525..20345670 | 672..817 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:29 Download gff for
BS25974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20342193..20342481 | 17..305 | 100 | -> | Plus |
| arm_2L | 20343599..20343672 | 306..379 | 100 | -> | Plus |
| arm_2L | 20343743..20343947 | 380..584 | 100 | -> | Plus |
| arm_2L | 20345173..20345259 | 585..671 | 100 | -> | Plus |
| arm_2L | 20345525..20345670 | 672..817 | 100 | -> | Plus |
| arm_2L | 20345906..20346244 | 818..1156 | 100 | -> | Plus |
| arm_2L | 20346308..20346511 | 1157..1360 | 100 | -> | Plus |
| arm_2L | 20346578..20346891 | 1361..1674 | 100 | -> | Plus |
| arm_2L | 20346950..20347169 | 1675..1894 | 100 | | Plus |
BS25974.pep Sequence
Translation from 16 to 1893
> BS25974.pep
MEARPAKRSTAASVFRSHHMPRESDLVDIGSDASLYCGSDGESSQAQSTS
TSTPNPQTSSDQDLDQPQPTPRAAPRASASNNPPTPKPRQAIRSSKVLPS
ANSTLSRSRQRLIKVDFSKFQDDDLFYDENSISSSHSTAATHQHHPHFAE
MHRCSQPKMPPYPFGGYMVPSQARQDCRETASLMRPRRTMEPAKQVPPPE
EPSFTKDEYHKFYDTALESYDLATQCESRRASLRRHTIVGCQSNLDETHS
MPPTRPESRQSDDVSKETPKRSPAEQTHPSDEGSSTSSLGPWNKSFMDKQ
TWMERGDDRLSVTLAEIVHIRSVMTKAELEGLPMDVRVKEDVEKRRVCFL
CLRTRFSFFGPWGIQCKLCQRTVCAKCYTKMRIPSEHFRNVPLVLISPSL
LSSPASSSTPSPSHHAQQAHSSSTGNIMDDQFPKSLIERLLRSESDRKTR
STVGSAPSSPKHQRSNMSTPGISVGPGASSSSAAATGQAVEALHDQATMS
SSYSAAMRPSGVHQQQKQHYNNAMSRSMEGPRSLPVHSPAYRPLSNNSTL
ERKSRFSRGFNLFSSGSHLAQTQEQKENLRGEQVTVCNDCQGLVNEITSS
VKQKRSSARNRTIQNLTLDLTPVWK*
BS25974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-PC | 625 | CG10076-PC | 1..625 | 1..625 | 3267 | 100 | Plus |
| spir-PF | 1018 | CG10076-PF | 439..1018 | 52..625 | 2790 | 93.3 | Plus |
| spir-PA | 1020 | CG10076-PA | 441..1020 | 52..625 | 2790 | 93.3 | Plus |
| spir-PE | 990 | CG10076-PE | 440..990 | 52..625 | 2586 | 88.1 | Plus |
| spir-PB | 991 | CG10076-PB | 441..991 | 52..625 | 2586 | 88.1 | Plus |
