BS25975.complete Sequence
1919 bp assembled on 2011-08-25
GenBank Submission: KX805528
> BS25975.complete
GAAGTTATCAGTCGACATGCGGTTGCCTTTTTTAGGAGTATCGCTAATCC
TTCTGCTCTCCGTGACCTTCGGAATCGGCCAGTCCAGCTATGAACTGGCT
ACCAAGCAGATACTTGATAGAGCCAAAGACCGCATGCGCCACGTGTGGAG
TCTGAACCGCAGGATCTTTGTGCAGCTCACGGCCAAAGGAAAGTCACCTC
TGGGCGGACAGGTTCTCAACTCCAAGCTGGAGGTAGAGGCGGAGACCTAT
CGACTATTTTACGACTTAGCGGGCAATCTCAGCGTTGTGTCAGTGGCTGA
ATTGAATGACCCACTTCTTCGTAGGCGCGTGCAGCGAATGGCCAAGTTGC
AGCTGCAGGGACTGCGGCCAAAGGACTACGAGCAGGCCAAGGACCTTCTA
CGTCAGATCCATAACTTTGTCAACGGACCCCTGGTCTGCCCTTACGAGGA
CTGCTCCGCCCGTGGTTCGCTGGCCATGTACCCGCAGATCATGAACAAAA
ACATGCACACCAAGCTATACGAGGATCTGGTCATCAACTGGAAGGCCTGG
CGCAGGGCCATTAACGAGAAGGACGTGGCCAAGAACACGTTCATCGGCTA
CGTTAGGCTTCTCCGGATCGCTGCCACTTACAACGGGCATGTGACGCCCT
CGCGCACGTGGTACCTTAACTACGACACGGAGAACTTTCAAGCTGAAATG
GAGGCGGTCGTGTGGGAGATAATGCCGCTATATCGAGAACTGCACGCCTA
TTTGCGTCGCGAGGTGCAAGCTGCCTACCCAAAGGCGGACACAAAGAGCG
ATGGCGCCATCTCCGCTCCCATTATGGACCAGATCCTGTCGCAGGACTGG
TATCCTCACCAGTTCTTTCGCACACCGCACCAGGGCAGACAGCATCAGTT
GCCCTCCGTTCATCGGCGTCTGGAGGAGGTCCTGGTGACGCCCGTCAAAA
TCAACCGCAAAGCTGCCGAGTTTTTTGAATCGTTGGGCTTAATGGTTATG
CCGAATATCTTTTACGACCGCTTTTCGCGCCGGATGAACGACGAGGAGGG
CGGAGCTGAGTGCAAGTCGCAGGTATATTACTTTCCGCCGGACGTGGCGC
TGCGCTACTGCCCCAAACTAGACTACAAGAAGATGATGCAGATTCACGGA
ACGATGGCTGAACTGCAGTACCACCTCTACAAGATGCAACTACCCTTTGG
TCTCGACACGGAGCCATGTCCTGGATTTGGAGCTGCCATAGCGGAAACAG
TTATTCTGGCTTCAGGGACTCCACGCCATCTGCACCGTCTCCACATCCTT
CTGAACGACAGCCTTACGGAGGAGCAGTCCCTTAACCGCCTGTTTCGCAT
GGGTGTGCACACCTTGATCGCCGTGCCCCAGTACTTCATCAATGACAAAT
TCCTCGTGGACGTAATGGACGGGCGAATCGGAGTAAAGGACTATAACTGC
GCTTACTGGGGCCTCCAGGACAAATTCGCCGGAGTTCAGCCGCCATTACA
ACGTCTTAACAAGGACTTTGATGTGGATTTCAAGTTCTATCGAGGACTAA
ATCCGGAAACCTCCAATACCAAAAAATTCCTGGCCGAGATCCTGGGATTC
CAGTTCTACCGTTCCTTTTGCCTGGCAAGTGGCCAGTACAAGCCCGGTGA
TCCCAATTTCCCACTTCACAATTGCGATTTCTACGACAGCAAAGAAGCAG
GAAAAAAGATTCGCGACATGATGCAGCTGGGAGCCACTCGACATTGGCGG
GATGTCATGGAGATAGCCACCGGTGAACGAAAGTTGAGCGGACGCGGTAT
CCTTGAGTACTTTGCCCCACTTTTCACGTGGCTGAAGGAGCGCAACAAGC
AACTGGACATCGAGCCGGGCTGGGATGCAGATGAATTGTGTCGAAGGGAC
TAAAAGCTTTCTAGACCAT
BS25975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-5-RA | 1887 | CG10142-PA | 1..1887 | 17..1903 | 9435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-5-RA | 2116 | CG10142-RA | 113..1999 | 17..1903 | 9435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24889923..24890911 | 1005..17 | 4945 | 100 | Minus |
| 2R | 25286936 | 2R | 24889195..24889761 | 1572..1006 | 2835 | 100 | Minus |
| 2R | 25286936 | 2R | 24888822..24889135 | 1886..1573 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:04:12 has no hits.
BS25975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-25 16:40:27 Download gff for
BS25975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-5-RA | 112..1996 | 17..1901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:42 Download gff for
BS25975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-5-RA | 113..1997 | 17..1901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:21 Download gff for
BS25975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-5-RA | 113..1997 | 17..1901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:21 Download gff for
BS25975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24888822..24889135 | 1573..1886 | 100 | <- | Minus |
| 2R | 24889195..24889761 | 1006..1572 | 100 | <- | Minus |
| 2R | 24889923..24890911 | 17..1005 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:42 Download gff for
BS25975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20776345..20776658 | 1573..1886 | 100 | <- | Minus |
| arm_2R | 20776718..20777284 | 1006..1572 | 100 | <- | Minus |
| arm_2R | 20777446..20778434 | 17..1005 | 100 | | Minus |
BS25975.pep Sequence
Translation from 16 to 1902
> BS25975.pep
MRLPFLGVSLILLLSVTFGIGQSSYELATKQILDRAKDRMRHVWSLNRRI
FVQLTAKGKSPLGGQVLNSKLEVEAETYRLFYDLAGNLSVVSVAELNDPL
LRRRVQRMAKLQLQGLRPKDYEQAKDLLRQIHNFVNGPLVCPYEDCSARG
SLAMYPQIMNKNMHTKLYEDLVINWKAWRRAINEKDVAKNTFIGYVRLLR
IAATYNGHVTPSRTWYLNYDTENFQAEMEAVVWEIMPLYRELHAYLRREV
QAAYPKADTKSDGAISAPIMDQILSQDWYPHQFFRTPHQGRQHQLPSVHR
RLEEVLVTPVKINRKAAEFFESLGLMVMPNIFYDRFSRRMNDEEGGAECK
SQVYYFPPDVALRYCPKLDYKKMMQIHGTMAELQYHLYKMQLPFGLDTEP
CPGFGAAIAETVILASGTPRHLHRLHILLNDSLTEEQSLNRLFRMGVHTL
IAVPQYFINDKFLVDVMDGRIGVKDYNCAYWGLQDKFAGVQPPLQRLNKD
FDVDFKFYRGLNPETSNTKKFLAEILGFQFYRSFCLASGQYKPGDPNFPL
HNCDFYDSKEAGKKIRDMMQLGATRHWRDVMEIATGERKLSGRGILEYFA
PLFTWLKERNKQLDIEPGWDADELCRRD*
BS25975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-5-PA | 628 | CG10142-PA | 1..628 | 1..628 | 3340 | 100 | Plus |
| Ance-PC | 615 | CG8827-PC | 62..612 | 70..625 | 704 | 27.4 | Plus |
| Ance-PB | 615 | CG8827-PB | 62..612 | 70..625 | 704 | 27.4 | Plus |
| Ance-PA | 615 | CG8827-PA | 62..612 | 70..625 | 704 | 27.4 | Plus |
| Acer-PB | 630 | CG10593-PB | 72..614 | 71..619 | 691 | 27.5 | Plus |
