BS25977.complete Sequence
1982 bp assembled on 2011-08-23
GenBank Submission: KX800909
> BS25977.complete
GAAGTTATCAGTCGACATGGTGGATAAATTCATCAGCATGTGGAAAGTGC
GCGAATTGGCGGACAAGGTCACCAATGTCGTGATGAATTACACGGAAACG
GAGGGCAAGGTGCGGGAGGCCACCAACGATGATCCTTGGGGGCCTACAGG
ACCCCTCATGCAGGAATTGGCCTATTCCACCTTCTCATACGAAACATTCC
CGGAGGTGATGTCCATGCTGTGGAAGCGCATGCTGCAGGACAATAAAACC
AACTGGCGACGCACGTACAAGAGCCTCCTTCTGCTAAACTATTTGGTGCG
AAACGGCTCTGAACGGGTGGTAACCTCCTCTCGGGAGCACATCTACGATC
TGCGCTCGCTGGAGAACTATACATTCACCGACGAGGGCGGCAAGGATCAG
GGTATTAATGTTAGGCATAAGGTACGAGAGCTTATAGACTTTATTCAGGA
TGATGATCGTTTGCGCGAGGAGCGCAAAAAGGCGAAGAAGAACAAGGACA
AGTACATCGGCATGAGCAGCGACGCCATGGGCATGCGAAGCGGTGGCTAC
AGCGGCTATAGCGGTGGATCTGGAGGAGGCGGCGGTGGCAGCGGTGGCTA
CAATGATGGCGACTATCGCTCTAGTCGTGGAGACAATTGGTACTCCGACA
AAAGCGCCGACAAGGATCGGTATGAGGATGATGATACTCACTACGATGGA
GAGCGAGAGGGATCCGATAGCGACTCACCCAGTCCAAGACGTAACTATCG
ATACAATGACCGTGCGAGTCCTGCCGAAGTAGCCAGCGAGGCCAAACCTT
CCAGCCTCAACATGAACATTCGTTCGAAGACCGTCAGTTCCCCTGTCTCC
AAGCAGCCCACTTCAACGGCTTCTGCCAAGCCAGCGCTGTCCCAGAAGAA
GATCGATCTGGGTGCGGCAGCAAACTTTGGAAAGCCAGCTCCTGGCGGTG
CTGCTGGCATTCACTCACCAACTCACCGTGACACTCCCACCAGCGTGGAC
TTGATGGGCGGCGCTTCGCCATCGCCGTCTACTTCCAAGGCAAACAATAA
TACGCAAAGCAATAACAACGATCTGCTGGACGATCTGTTCAAGACCTGCT
CGCCACCGCCGGGGCAGGAGAAGACGCTGAACAGTGCTGCCGTGATTGTG
GATGACGATGATGACTTCAATCCGCGTGCCAGCGATGCTAGCCAGCAGGA
ATTCGGCGACTTCGCCTCTGCTTTCGGGCAGCCCTCGGCGGGATCGACGA
TCAGCGAGCCACCATCAACGGGCCTGGTTCCGGCTGCGAACGATGAGTTC
GCCGACTTTGCGGCGTTCCAAGGCTCGACAACGTCGACATCTGCGCTGGA
CGGTAATTTGCTGAAGACTGCCACGCCGGCGAACGATTCGTTTGACCTGT
TTAATTCAGCTCCCACCTCGACGGCAGCAGCCACAACGGCTACAGATCTC
CTGGCAGGCCTGGGCGATCTGTCCATTCACCAAAGCATGCCCATGGACAA
TATGATGCCTCCCATTCCCGCCGTCACGGGCAATAATCTGCTCCAGCCCA
TGTCGGTGACCAATAATAACAATAATACCAACGGAGGCGCAGTCCCCGCC
GCTGCCAGTGTCCAGTCTACCGCTGTGGGCGCCACCTGGTCGGGCGACCT
GAAGGGCGGCAAGATGAACATTGACCTGGACAATCTGCTGATGAGCAAGT
CGGGCAAGCCCAGTGCCCCGGCCCCTTCGATGAATGCCCTGAAGACCAAC
AGTCCGGCAAAGGCGCCACTGAATGTGCAGACGGGTGGCGGATTCCCTGG
ACTGTCGCCAATGACCAGTCCGAACATTTTTGGGGCTCCGGCACCGCAGC
AAAGCATTCCACAAAACCAATCAGCATTTGCCAACTTTGGAGCTTTCCAG
CAGCAGCAGCAGAATCACAGCAATAATAACAATAATAGCTCGTCGGCATT
CGACTTGTTTCAATGAAAGCTTTCTAGACCAT
BS25977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqfR-RC | 1950 | CG42250-PC | 1..1950 | 17..1966 | 9750 | 100 | Plus |
| lqfR-RD | 4248 | CG42250-PD | 1..1480 | 17..1496 | 7400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqfR-RC | 2707 | CG42250-RC | 285..2234 | 17..1966 | 9750 | 100 | Plus |
| lqfR-RD | 5024 | CG31285-RA | 285..1764 | 17..1496 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22413518..22414277 | 737..1496 | 3800 | 100 | Plus |
| 3R | 32079331 | 3R | 22418108..22418578 | 1496..1966 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 22412908..22413279 | 270..641 | 1860 | 100 | Plus |
| 3R | 32079331 | 3R | 22412649..22412850 | 70..271 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 22413361..22413457 | 642..738 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 22411585..22411637 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 660..717 | 635..575 | 118 | 68.9 | Minus |
BS25977.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:54 Download gff for
BS25977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 253..2201 | 17..1965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:21 Download gff for
BS25977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 285..2233 | 17..1965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:19 Download gff for
BS25977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqfR-RC | 285..2233 | 17..1965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:19 Download gff for
BS25977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22411585..22411637 | 17..69 | 100 | -> | Plus |
| 3R | 22412649..22412850 | 70..271 | 100 | -> | Plus |
| 3R | 22412910..22413279 | 272..641 | 100 | -> | Plus |
| 3R | 22413361..22413457 | 642..738 | 100 | -> | Plus |
| 3R | 22413520..22414277 | 739..1496 | 100 | -> | Plus |
| 3R | 22418109..22418577 | 1497..1965 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:21 Download gff for
BS25977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18238632..18239001 | 272..641 | 100 | -> | Plus |
| arm_3R | 18239083..18239179 | 642..738 | 100 | -> | Plus |
| arm_3R | 18237307..18237359 | 17..69 | 100 | -> | Plus |
| arm_3R | 18238371..18238572 | 70..271 | 100 | -> | Plus |
| arm_3R | 18239242..18239999 | 739..1496 | 100 | -> | Plus |
| arm_3R | 18243831..18244299 | 1497..1965 | 100 | | Plus |
BS25977.pep Sequence
Translation from 16 to 1965
> BS25977.pep
MVDKFISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQE
LAYSTFSYETFPEVMSMLWKRMLQDNKTNWRRTYKSLLLLNYLVRNGSER
VVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELIDFIQDDDRLR
EERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDY
RSSRGDNWYSDKSADKDRYEDDDTHYDGEREGSDSDSPSPRRNYRYNDRA
SPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGA
AANFGKPAPGGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNN
NDLLDDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRASDASQQEFGDFA
SAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTTSTSALDGNLLK
TATPANDSFDLFNSAPTSTAAATTATDLLAGLGDLSIHQSMPMDNMMPPI
PAVTGNNLLQPMSVTNNNNNTNGGAVPAAASVQSTAVGATWSGDLKGGKM
NIDLDNLLMSKSGKPSAPAPSMNALKTNSPAKAPLNVQTGGGFPGLSPMT
SPNIFGAPAPQQSIPQNQSAFANFGAFQQQQQNHSNNNNNSSSAFDLFQ*
BS25977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqfR-PC | 649 | CG42250-PC | 1..649 | 1..649 | 3393 | 100 | Plus |
| lqfR-PD | 1415 | CG42250-PD | 1..493 | 1..493 | 2578 | 100 | Plus |
| lqf-PF | 640 | CG8532-PF | 5..625 | 11..635 | 405 | 25.2 | Plus |
| lqf-PL | 630 | CG8532-PL | 5..610 | 11..622 | 401 | 25.1 | Plus |
| lqf-PG | 630 | CG8532-PG | 5..610 | 11..622 | 401 | 25.1 | Plus |
