BS25978.complete Sequence
1583 bp assembled on 2011-09-14
GenBank Submission: KX804428
> BS25978.complete
GAAGTTATCAGTCGACATGTCCAAATACGATCTGCTTTATCTAACGGCGC
AGCTAACGCTGGTCTGCTGTCTGATTGGAATCCATGGATCTATTTTGCCC
GGAAGTCATGGGATCATAGAATGCGAGCACTTCGACGAGAAGATGTGCAA
CACAACGCAGCAATGTGAAACACGGATAGAGCACTGTAAGATGGAGGCGG
ATAAGTTTCCCAGCTGCTATGTCCTTTGGTCGGTCAACGAGACAACGGGC
ATCCTGCGCATCAAGATGAAGGGCTGCTTCACGGACATGCACGAATGCAA
TCAGACGGAGTGCGTGACCAGTGCAGAGCCACGGCAGGGAAACATTCACT
TCTGCTGCTGCAAGGGATCGCGGTGCAATTCCAACCAGAAATATATTAAA
AGCACCACGGAGGCAACCACACAAGTGCCCAAGGAGAAGACGCAGGACGG
CAGCAATTTGATATACATCTACATTGGCACCTCCGTTTTCAGCGTGCTCA
TGGTCATTGTTGGCATGGGCCTTCTTCTCTACCGACGCCGCAAGCAGGCG
CACTTTAACGAGATACCCACGCACGAGGCTGAGATAACAAACTCATCGCC
ATTGCTCAGCAACCGTCCCATTCAGCTGCTGGAACAGAAGGCCAGTGGTA
GATTCGGTGATGTGTGGCAAGCCAAGCTCAACAATCAGGATGTGGCCGTC
AAGATCTTTCGCATGCAGGAAAAAGAATCGTGGACCACGGAGCACGATAT
CTACAAGCTGCCGCGCATGCGCCATCCGAACATCCTCGAATTCCTGGGCG
TTGAGAAGCACATGGACAAGCCGGAATATTGGCTGATATCCACCTACCAG
CATAACGGATCACTATGCGACTACCTCAAATCGCACACGATCTCATGGCC
AGAGTTGTGCCGCATCGCTGAGTCCATGGCCAATGGACTGGCACATCTGC
ACGAGGAGATCCCGGCATCAAAGACCGATGGGCTAAAACCATCGATAGCT
CACCGAGACTTCAAGTCTAAGAACGTACTGCTTAAGAGCGATCTGACGGC
CTGTATAGCTGACTTTGGTTTGGCCATGATATTCCAGCCAGGCAAGCCCT
GCGGCGATACACACGGTCAAGTAGGCACTCGACGTTACATGGCCCCAGAG
GTGCTTGAGGGTGCCATCAATTTCAATAGAGACGCTTTCTTACGCATAGA
CGTCTACGCATGCGGCCTAGTCCTCTGGGAAATGGTGTCACGGTGTGACT
TTGCCGGACCCGTCGGTGAGTTCCAGCTGCCTTTTGAGGCCGAGCTGGGC
CTGAGGCCGTCGCTGGACGAAGTTCAGGAGAGTGTGGTAATGAAGAAGCT
GCGCCCTCGTTTGCTCAACTCCTGGCGCGCCCATCCGGGACTTAATGTAT
TCTGCGACACAATGGAGGAGTGCTGGGATCACGACGCTGAGGCTCGTCTT
AGCTCTTCGTGTGTGATGGAACGCTTTGCGCAGCTAAACAAGTATCCCTC
AACCCAGTTGCTAATCAAGAACCACACCAACATTGACGACGCCAAGGAAT
CTACGAATTGCTTATAGAAGCTTTCTAGACCAT
BS25978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| put-RB | 1563 | CG7904-PB | 1..1555 | 17..1571 | 7775 | 100 | Plus |
| put-RC | 1551 | CG7904-PC | 1..1551 | 17..1567 | 7755 | 100 | Plus |
| put-RA | 1551 | CG7904-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| put-RB | 2713 | CG7904-RB | 459..2013 | 17..1571 | 7775 | 100 | Plus |
| put-RC | 4013 | CG7904-RC | 459..2013 | 17..1571 | 7775 | 100 | Plus |
| put-RA | 2713 | CG7904-RA | 459..2013 | 17..1571 | 7775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14621273..14622090 | 1388..571 | 4090 | 100 | Minus |
| 3R | 32079331 | 3R | 14623486..14623673 | 249..62 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 14621030..14621214 | 1571..1387 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 14623243..14623420 | 425..248 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 14622158..14622305 | 571..424 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 14625200..14625245 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:26:47 has no hits.
BS25978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:33 Download gff for
BS25978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 455..2005 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:18 Download gff for
BS25978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 459..2009 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:43 Download gff for
BS25978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 459..2009 | 17..1567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:43 Download gff for
BS25978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14621034..14621213 | 1388..1567 | 100 | <- | Minus |
| 3R | 14621274..14622089 | 572..1387 | 100 | <- | Minus |
| 3R | 14622158..14622303 | 426..571 | 100 | <- | Minus |
| 3R | 14623243..14623419 | 249..425 | 100 | <- | Minus |
| 3R | 14623487..14623672 | 63..248 | 100 | <- | Minus |
| 3R | 14625200..14625245 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:18 Download gff for
BS25978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10446756..10446935 | 1388..1567 | 100 | <- | Minus |
| arm_3R | 10446996..10447811 | 572..1387 | 100 | <- | Minus |
| arm_3R | 10447880..10448025 | 426..571 | 100 | <- | Minus |
| arm_3R | 10448965..10449141 | 249..425 | 100 | <- | Minus |
| arm_3R | 10449209..10449394 | 63..248 | 100 | <- | Minus |
| arm_3R | 10450922..10450967 | 17..62 | 100 | | Minus |
BS25978.pep Sequence
Translation from 16 to 1566
> BS25978.pep
MSKYDLLYLTAQLTLVCCLIGIHGSILPGSHGIIECEHFDEKMCNTTQQC
ETRIEHCKMEADKFPSCYVLWSVNETTGILRIKMKGCFTDMHECNQTECV
TSAEPRQGNIHFCCCKGSRCNSNQKYIKSTTEATTQVPKEKTQDGSNLIY
IYIGTSVFSVLMVIVGMGLLLYRRRKQAHFNEIPTHEAEITNSSPLLSNR
PIQLLEQKASGRFGDVWQAKLNNQDVAVKIFRMQEKESWTTEHDIYKLPR
MRHPNILEFLGVEKHMDKPEYWLISTYQHNGSLCDYLKSHTISWPELCRI
AESMANGLAHLHEEIPASKTDGLKPSIAHRDFKSKNVLLKSDLTACIADF
GLAMIFQPGKPCGDTHGQVGTRRYMAPEVLEGAINFNRDAFLRIDVYACG
LVLWEMVSRCDFAGPVGEFQLPFEAELGLRPSLDEVQESVVMKKLRPRLL
NSWRAHPGLNVFCDTMEECWDHDAEARLSSSCVMERFAQLNKYPSTQLLI
KNHTNIDDAKESTNCL*
BS25978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| put-PB | 520 | CG7904-PB | 1..516 | 1..516 | 2783 | 100 | Plus |
| put-PC | 516 | CG7904-PC | 1..516 | 1..516 | 2783 | 100 | Plus |
| put-PA | 516 | CG7904-PA | 1..516 | 1..516 | 2783 | 100 | Plus |
| wit-PA | 903 | CG10776-PA | 65..548 | 56..503 | 631 | 33.2 | Plus |
| wit-PB | 913 | CG10776-PB | 65..548 | 56..503 | 631 | 33.2 | Plus |
