BS25979.complete Sequence
2057 bp assembled on 2011-08-23
GenBank Submission: KX800711
> BS25979.complete
GAAGTTATCAGTCGACATGAGTATTTGGGGGGTCCGATGTCTGACGCAGA
GGTTCATCCGGCAGGCGTACATCCTGGCCAACAGAAGGCTATTGGGTCCA
GTGCCGCAGCGCTCGCCGCCGGCATACGCTCCTCTTCGGCCAGCCCACAG
CAGCCTCTATCAAATGGGCTTTGCTGACGTCAAGTCCGTCTGCAGTGCTA
AGGATGTGTTAAAGTCGGACAGTGCAAAGCTCAGCACCAGCCAACCCGTC
CTGGATTCCTGCAAAGCGACTAGTCCCTGCGAGGAATTCAAGCGCAAACG
AAAGGAGACCACCTGCCAGCCCTGCGACGAGGATGGTACTGCTCCCGGTG
GCGGTGATGGTGGAGACGAGGAGTGCGAGTGTCGGATGAAGGACCTACGG
CTTAAGTGCCTCTTGGGTGCCCTGGCTGCCTTGTTAGCCGGAGGATTTCT
CGCTTGGTTTATGACGCGGGATACGGATGACAGTGAAGCCAAAAAAGCCG
AGGCGGAGGAGGAGGAACGAAAACGTAGATTAGTTGCTGGACTAGCCACG
AGTCCGCCCAGTTCTGAGGACCTTCCCAAGCATGTGCCGTACCTGATTAT
CGGCGGCGGAACCGCTGCCTTCTCTGCTTTCCGAGCCATCAAGTCTAACG
ATGCAACAGCCAAGGTTTTGATGATAAGCAACGAATTCCGCAAACCCTAC
ATGCGCCCCCCACTGTCCAAGGAACTGTGGTATACGCCCAATCCTAACGA
GGATCCCATCAAGGACTATCGATTCAAACAATGGACGGGATCCGAGAGAA
GCTTGTTCTTTGAGCCGGATGAGTTTTTCATTGACCCCGAGGATCTGGAT
GATAATGCAAATGGAGGGATTGCCGTCGCTCAAGGTTTCTCTGTGAAGAA
GGTGGACGCTCAAAAACGCATAGTGACGTTGAACGACGGTTACGAGATAA
GCTACGACGAATGCCTAATTGCCACCGGCTGTGCCCCCAAGAACCTGCCC
ATGCTGCGTGATGCTCCGCCCAGCGTGCTCGAAAAAGTAATGGTCTATCG
CACACCCGATGACTTTGATCGCCTCCGCAAATTGGCGGCGGAAAAGCGTT
CAATCACAATTGTTGGCAATGGATTTATCGGCAGTGAACTGGCCTGCTCC
CTGGCACACTATTCCAGAGAGAACAATGGCGGTAAAGTGTACCAGGTGTT
CCAGGAAAATGCCAACATGTCAAAGGTCCTTCCAAACTACTTGAGTCGCT
GGACGACGGCAAAGATGGAAGCCCAGGGTGTCTGCGTCATCCCCAACGCC
AGCATTCGCTCGGCAGTTCGCGATGAAACCAATCTAAAGTTGGAGTTAAA
CAATGGAATGACTTTGATGTCGGACGTGGTGGTGGTCTGCGTGGGTTGCA
CGCCAAACACGGATCTCGCGGGACCCAGCAGGCTAGAGGTGGACAGAAGT
CTCGGCGGTTTTGTGGTTAATGCAGAGCTGGAGGCCAGGCGGAACCTGTA
CGTGGCCGGTGATGCTTCCTGCTTCTTCGATCCTCTGCTGGGCAGGCGAC
GGGTGGAGCACCATGATCACTCGGTGGTCTCTGGTCGGCTGGCCGGCGAG
AACATGACGGGAGCAAAGAAACCTTATCAACATCAGAGCATGTTTTGGTC
CGATCTAGGTCCAGAGATCGGATACGAGGGTATTGGCTTGGTGGATTCCT
CGCTACCCACCGTTGGTGTGTTCGCCCTGCCCTCGGAATCCGCCACGCGC
GTCGACCAACTGTCTGAGTCTAGTGATTCCGACGTGCCGGAGACCAGTAC
GAGTTCCAGCCAGTCGTCAAAATCTGATGCCGGGGCTAGCCAAGATGGCG
TTACCTGTGATCCCGATGAGGCGGGCAACTATGGCAAGGGTGTAATATTC
TACTTGAAGAACGACAAGATCGTCGGCATCCTGCTGTGGAACCTCTTCAA
TCGGATAGGCTTAGCTAGGACAATAATCAATCAGAATAAGAAGTACGATG
ACCTCAATGAGGTGGCCAAACTGTTCGAGATTCACGCGTAGAAGCTTTCT
AGACCAT
BS25979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AIF-RA | 2025 | CG7263-PA | 1..2025 | 17..2041 | 10065 | 99.8 | Plus |
| AIF-RB | 2220 | CG7263-PB | 334..2220 | 155..2041 | 9330 | 99.6 | Plus |
| AIF-RC | 2217 | CG7263-PC | 343..2217 | 167..2041 | 9315 | 99.8 | Plus |
| AIF-RB | 2220 | CG7263-PB | 1..151 | 17..167 | 755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AIF-RA | 2798 | CG7263-RA | 282..2307 | 17..2042 | 10070 | 99.8 | Plus |
| AIF-RB | 2709 | CG7263-RB | 615..2502 | 155..2042 | 9335 | 99.6 | Plus |
| AIF-RC | 2990 | CG7263-RC | 624..2499 | 167..2042 | 9320 | 99.8 | Plus |
| AIF-RB | 2709 | CG7263-RB | 282..432 | 17..167 | 755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2153594..2154410 | 800..1616 | 4085 | 100 | Plus |
| 2L | 23513712 | 2L | 2154469..2154898 | 1613..2042 | 2120 | 99.5 | Plus |
| 2L | 23513712 | 2L | 2152662..2152944 | 166..448 | 1415 | 100 | Plus |
| 2L | 23513712 | 2L | 2153282..2153531 | 552..801 | 1205 | 98.8 | Plus |
| 2L | 23513712 | 2L | 2152035..2152146 | 17..128 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 2153003..2153107 | 449..553 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 2152232..2152271 | 128..167 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:59:17 has no hits.
BS25979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:55 Download gff for
BS25979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AIF-RA | 372..2396 | 17..2041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:43 Download gff for
BS25979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AIF-RA | 282..2306 | 17..2041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:33 Download gff for
BS25979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AIF-RA | 282..2306 | 17..2041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:33 Download gff for
BS25979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2152663..2152944 | 167..448 | 100 | -> | Plus |
| 2L | 2153003..2153105 | 449..551 | 100 | -> | Plus |
| 2L | 2153282..2153531 | 552..801 | 98 | -> | Plus |
| 2L | 2152035..2152146 | 17..128 | 100 | -> | Plus |
| 2L | 2152233..2152270 | 129..166 | 100 | -> | Plus |
| 2L | 2153596..2154410 | 802..1616 | 100 | -> | Plus |
| 2L | 2154473..2154897 | 1617..2041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:43 Download gff for
BS25979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2152035..2152146 | 17..128 | 100 | -> | Plus |
| arm_2L | 2152233..2152270 | 129..166 | 100 | -> | Plus |
| arm_2L | 2152663..2152944 | 167..448 | 100 | -> | Plus |
| arm_2L | 2153003..2153105 | 449..551 | 100 | -> | Plus |
| arm_2L | 2153282..2153531 | 552..801 | 98 | -> | Plus |
| arm_2L | 2153596..2154410 | 802..1616 | 100 | -> | Plus |
| arm_2L | 2154473..2154897 | 1617..2041 | 99 | | Plus |
BS25979.pep Sequence
Translation from 16 to 2040
> BS25979.pep
MSIWGVRCLTQRFIRQAYILANRRLLGPVPQRSPPAYAPLRPAHSSLYQM
GFADVKSVCSAKDVLKSDSAKLSTSQPVLDSCKATSPCEEFKRKRKETTC
QPCDEDGTAPGGGDGGDEECECRMKDLRLKCLLGALAALLAGGFLAWFMT
RDTDDSEAKKAEAEEEERKRRLVAGLATSPPSSEDLPKHVPYLIIGGGTA
AFSAFRAIKSNDATAKVLMISNEFRKPYMRPPLSKELWYTPNPNEDPIKD
YRFKQWTGSERSLFFEPDEFFIDPEDLDDNANGGIAVAQGFSVKKVDAQK
RIVTLNDGYEISYDECLIATGCAPKNLPMLRDAPPSVLEKVMVYRTPDDF
DRLRKLAAEKRSITIVGNGFIGSELACSLAHYSRENNGGKVYQVFQENAN
MSKVLPNYLSRWTTAKMEAQGVCVIPNASIRSAVRDETNLKLELNNGMTL
MSDVVVVCVGCTPNTDLAGPSRLEVDRSLGGFVVNAELEARRNLYVAGDA
SCFFDPLLGRRRVEHHDHSVVSGRLAGENMTGAKKPYQHQSMFWSDLGPE
IGYEGIGLVDSSLPTVGVFALPSESATRVDQLSESSDSDVPETSTSSSQS
SKSDAGASQDGVTCDPDEAGNYGKGVIFYLKNDKIVGILLWNLFNRIGLA
RTIINQNKKYDDLNEVAKLFEIHA*
BS25979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AIF-PA | 674 | CG7263-PA | 1..674 | 1..674 | 3524 | 100 | Plus |
| AIF-PB | 739 | CG7263-PB | 96..739 | 35..674 | 3277 | 98.1 | Plus |
| AIF-PC | 738 | CG7263-PC | 96..738 | 35..674 | 3266 | 98.1 | Plus |
| AIF-PB | 739 | CG7263-PB | 1..87 | 1..92 | 271 | 64.1 | Plus |
| AIF-PC | 738 | CG7263-PC | 1..87 | 1..92 | 271 | 64.1 | Plus |
| CG4199-PA | 552 | CG4199-PA | 141..536 | 192..613 | 185 | 23.4 | Plus |
| CG4199-PI | 593 | CG4199-PI | 182..577 | 192..613 | 185 | 23.4 | Plus |
