BS25980.complete Sequence
2072 bp assembled on 2011-08-23
GenBank Submission: KX806315
> BS25980.complete
GAAGTTATCAGTCGACATGTCGGAGGGCAGCGATAACAACGGGGATCCCC
AGCAGCAGGGGGCGGAGGGGGAGGCGGTGGGCGAGAACAAAATGAAGTCC
CGCCTCCGCAAAGGAGCCCTCAAGAAGAAGAACGTCTTCAATGTCAAGGA
TCACTGCTTCATCGCCCGGTTCTTCAAGCAGCCCACGTTCTGCTCCCACT
GCAAGGACTTTATCTGCGGCTATCAGTCGGGATATGCATGGATGGGCTTC
GGAAAGCAAGGATTTCAGTGCCAAGTTTGCTCCTATGTGGTGCACAAGCG
GTGCCACGAATATGTCACCTTCATCTGCCCGGGCAAGGATAAGGGCATCG
ATTCGGACTCACCAAAAACTCAACACAATTTCGAGCCATTCACATACGCA
GGACCCACGTTCTGCGATCATTGTGGGTCCCTGCTGTATGGCATTTACCA
CCAGGGTCTCAAATGCTCAGCATGTGACATGAACGTGCATGCCCGCTGCA
AGGAGAACGTGCCCAGCCTTTGCGGATGCGATCACACGGAGCGGCGGGGT
CGCATTTATCTGGAGATCAATGTCAAGGAGAATCTGCTAACTGTCCAGAT
CAAGGAGGGTCGCAATCTCATACCCATGGACCCAAACGGACTGAGCGATC
CCTATGTGAAGGTGAAGCTAATTCCAGATGACAAGGATCAATCCAAGAAG
AAGACTCGCACCATTAAGGCTTGCCTAAATCCTGTCTGGAATGAGACACT
CACTTATGATCTAAAGCCCGAAGACAAGGATCGACGCATCCTGATCGAAG
TGTGGGACTGGGATCGCACTTCACGCAATGACTTTATGGGTGCTTTGTCC
TTCGGAATCTCAGAGATCATCAAGAACCCAACCAATGGCTGGTTCAAACT
GCTCACCCAGGACGAAGGCGAGTACTACAATGTGCCATGTGCGGATGATG
AGCAGGACCTACTGAAGCTCAAGCAGAAACCATCGCAAAAGAAGCCGATG
GTAATGCGCAGCGATACGAACACGCATACTTCTTCCAAAAAGGATATGAT
CCGGGCCACGGACTTTAATTTCATCAAAGTTCTCGGCAAGGGCTCATTTG
GAAAGGTTTTGCTGGCTGAGCGCAAAGGCAGCGAGGAGTTGTATGCCATT
AAGATACTCAAAAAGGATGTGATCATTCAGGACGACGACGTCGAGTGCAC
CATGATCGAAAAGCGTGTCCTGGCGCTGGGCGAAAAGCCACCTTTCCTGG
TCCAATTACACTCCTGCTTTCAGACGATGGACCGTTTGTTCTTTGTAATG
GAGTATGTGAATGGCGGCGATTTGATGTTCCAAATCCAACAGTTTGGCAA
GTTTAAGGAACCAGTGGCCGTATTTTATGCCGCTGAAATAGCAGCAGGTC
TTTTCTTCCTTCATACCAAGGGCATACTGTATCGAGATCTAAAGCTGGAT
AATGTGCTCCTAGACGCCGATGGACATGTGAAGATTGCGGACTTTGGCAT
GTGCAAGGAGAACATAGTGGGTGATAAGACCACAAAGACTTTCTGCGGTA
CACCTGATTACATTGCTCCAGAGATAATACTGTATCAGCCCTATGGCAAA
TCGGTGGACTGGTGGGCCTATGGAGTACTGCTTTATGAGATGTTAGTGGG
CCAGCCACCTTTCGATGGCGAAGATGAGGAGGAGCTGTTTGCCGCCATAA
CTGATCATAATGTGTCCTATCCAAAGAGCCTGAGCAAAGAGGCCAAAGAG
GCCTGCAAGGGCTTCCTAACTAAGCAGCCAAATAAGCGTTTGGGTTGTGG
TTCCTCTGGCGAGGAGGATGTGCGTCTGCATCCCTTTTTCAGACGCATCG
ATTGGGAGAAAATCGAAAATCGCGAAGTGCAACCGCCATTTAAGCCGAAA
ATTAAACACCGCAAGGATGTGTCCAACTTTGACAAGCAGTTCACATCAGA
GAAAACAGACTTGACGCCCACGGACAAGGTGTTTATGATGAATCTGGATC
AGTCGGAATTCGTTGGCTTCTCCTACATGAATCCCGAATATGTTTTCAGC
CCATAGAAGCTTTCTAGACCAT
BS25980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkc53E-RB | 2040 | CG6622-PB | 1..2040 | 17..2056 | 10200 | 100 | Plus |
| Pkc53E-RE | 2037 | CG6622-PE | 1..2037 | 17..2056 | 9560 | 98.1 | Plus |
| Pkc53E-RC | 2037 | CG6622-PC | 1..2037 | 17..2056 | 9560 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkc53E-RB | 2696 | CG6622-RB | 376..2416 | 17..2057 | 10205 | 100 | Plus |
| Pkc53E-RE | 2633 | CG6622-RE | 316..2353 | 17..2057 | 9565 | 98.1 | Plus |
| Pkc53E-RC | 2693 | CG6622-RC | 376..2413 | 17..2057 | 9565 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16941144..16941494 | 757..1107 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 16941953..16942154 | 1372..1573 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 16926608..16926807 | 17..216 | 1000 | 100 | Plus |
| 2R | 25286936 | 2R | 16942221..16942411 | 1572..1762 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 16941572..16941748 | 1104..1280 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 16940901..16941057 | 600..756 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 16942674..16942827 | 1904..2057 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 16942475..16942615 | 1763..1903 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 16940090..16940221 | 468..599 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 16932463..16932578 | 355..470 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 16941804..16941896 | 1279..1371 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 29045018..29045290 | 1060..1332 | 450 | 77.7 | Plus |
| 2R | 25286936 | 2R | 16931197..16931279 | 274..356 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:01:48 has no hits.
BS25980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:56 Download gff for
BS25980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 347..2386 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:42 Download gff for
BS25980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 376..2415 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:14 Download gff for
BS25980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 376..2415 | 17..2056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:14 Download gff for
BS25980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16942674..16942826 | 1904..2056 | 100 | | Plus |
| 2R | 16942475..16942615 | 1763..1903 | 100 | -> | Plus |
| 2R | 16926608..16926807 | 17..216 | 100 | -> | Plus |
| 2R | 16928125..16928151 | 217..243 | 100 | -> | Plus |
| 2R | 16931112..16931143 | 244..275 | 100 | -> | Plus |
| 2R | 16931199..16931278 | 276..355 | 100 | -> | Plus |
| 2R | 16932464..16932578 | 356..470 | 100 | -> | Plus |
| 2R | 16940093..16940221 | 471..599 | 100 | -> | Plus |
| 2R | 16940901..16941057 | 600..756 | 100 | -> | Plus |
| 2R | 16941144..16941492 | 757..1105 | 100 | -> | Plus |
| 2R | 16941574..16941747 | 1106..1279 | 100 | -> | Plus |
| 2R | 16941805..16941896 | 1280..1371 | 100 | -> | Plus |
| 2R | 16941953..16942154 | 1372..1573 | 100 | -> | Plus |
| 2R | 16942223..16942411 | 1574..1762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:42 Download gff for
BS25980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12827598..12827726 | 471..599 | 100 | -> | Plus |
| arm_2R | 12828406..12828562 | 600..756 | 100 | -> | Plus |
| arm_2R | 12814113..12814312 | 17..216 | 100 | -> | Plus |
| arm_2R | 12815630..12815656 | 217..243 | 100 | -> | Plus |
| arm_2R | 12818617..12818648 | 244..275 | 100 | -> | Plus |
| arm_2R | 12818704..12818783 | 276..355 | 100 | -> | Plus |
| arm_2R | 12819969..12820083 | 356..470 | 100 | -> | Plus |
| arm_2R | 12828649..12828997 | 757..1105 | 100 | -> | Plus |
| arm_2R | 12829079..12829252 | 1106..1279 | 100 | -> | Plus |
| arm_2R | 12829310..12829401 | 1280..1371 | 100 | -> | Plus |
| arm_2R | 12829458..12829659 | 1372..1573 | 100 | -> | Plus |
| arm_2R | 12829728..12829916 | 1574..1762 | 100 | -> | Plus |
| arm_2R | 12829980..12830120 | 1763..1903 | 100 | -> | Plus |
| arm_2R | 12830179..12830331 | 1904..2056 | 100 | | Plus |
BS25980.pep Sequence
Translation from 16 to 2055
> BS25980.pep
MSEGSDNNGDPQQQGAEGEAVGENKMKSRLRKGALKKKNVFNVKDHCFIA
RFFKQPTFCSHCKDFICGYQSGYAWMGFGKQGFQCQVCSYVVHKRCHEYV
TFICPGKDKGIDSDSPKTQHNFEPFTYAGPTFCDHCGSLLYGIYHQGLKC
SACDMNVHARCKENVPSLCGCDHTERRGRIYLEINVKENLLTVQIKEGRN
LIPMDPNGLSDPYVKVKLIPDDKDQSKKKTRTIKACLNPVWNETLTYDLK
PEDKDRRILIEVWDWDRTSRNDFMGALSFGISEIIKNPTNGWFKLLTQDE
GEYYNVPCADDEQDLLKLKQKPSQKKPMVMRSDTNTHTSSKKDMIRATDF
NFIKVLGKGSFGKVLLAERKGSEELYAIKILKKDVIIQDDDVECTMIEKR
VLALGEKPPFLVQLHSCFQTMDRLFFVMEYVNGGDLMFQIQQFGKFKEPV
AVFYAAEIAAGLFFLHTKGILYRDLKLDNVLLDADGHVKIADFGMCKENI
VGDKTTKTFCGTPDYIAPEIILYQPYGKSVDWWAYGVLLYEMLVGQPPFD
GEDEEELFAAITDHNVSYPKSLSKEAKEACKGFLTKQPNKRLGCGSSGEE
DVRLHPFFRRIDWEKIENREVQPPFKPKIKHRKDVSNFDKQFTSEKTDLT
PTDKVFMMNLDQSEFVGFSYMNPEYVFSP*
BS25980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkc53E-PB | 679 | CG6622-PB | 1..679 | 1..679 | 3682 | 100 | Plus |
| Pkc53E-PF | 670 | CG6622-PF | 1..670 | 1..679 | 3598 | 98.7 | Plus |
| Pkc53E-PA | 670 | CG6622-PA | 1..670 | 1..679 | 3598 | 98.7 | Plus |
| Pkc53E-PE | 678 | CG6622-PE | 1..678 | 1..679 | 3568 | 97.3 | Plus |
| Pkc53E-PC | 678 | CG6622-PC | 1..678 | 1..679 | 3568 | 97.3 | Plus |
